AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi4g03148 | ATGATGCTCCGAGCTTTAAAGACGACGGCGTCTTTCACCGGCCGTCGCCGGATAACCACCACCGTAATGGGTTTCGGCGACGGCAGCCACGGTGCGCTTGGCTTACCCACATCCGTCGGAATCGGTTCCGACGCGTACGAACCAACTCCGATCTCCACCCTACCTCCCGACGTTTCCACCGTCGCCGCCGGTCACTACCACTCTCTCGCCGTTACTTCCGACGGCCACCTCTGGTCGTGGGGCCGGAATGTCGAACACCAACTTGGGCGTGCAATTGATTCCCCTAGGGAAACGTGGGTTGAACCGGGAAGAGTAAACGGGTTGAATGGGGTCCGGTTGGCATCGGCGTCTGGTGTCGTGTCTGCAGCTATTAGAGTTGATGGGTCGTTATGGGTTTGGGGGAAATCGAAGCGTGGTCAACTAGGGCTTGGAACTGGGATCACCGAGGCTGTTGTTCCGTCCAGGGTTAAAGTTCTTGAGAAAGAAGAGATAATTAAGGTCTCATTTGGATGGGGGCATGCGCTTGCACTTACCAAAGATGGAAAGTTATTCGGTTGGGGATATTCAGCGGATGGCAGATTAGGAAAGAGAACGATTATGGGTGTTTCGCCTCTTGATTCGAAGGCTAACTCGTCTTCAAGTTTAAAGCTTGAAGATGCTGAGAAAGTAGTCTTGGAAGCTATGGATAAGGAGAACAGTATGCCCATAATCTGGGAGCCCTGCTTAGTTGATGAACTTAAAGGCGTTGAAGTTGCAGACGTGTCGTGTGGGCTCGACCATACCTTAGTTCTTCTACGTGATGGGACTTTATTAAGTGGTGGAAGCAATGCATATGGCCAACTGGGTCGGTCAACGCAAGATATGGAGTTTCGACCAGTTGACATAAGTGTCTACCCCGTCTCCATCGCTTCCGGGCTGGGCCACTCATTAGCAATATGCAGAGTCCCATCAGCAGAGGGCGGTGGGGGTATTTCAGGCATTTTTTCATGGGGTTGGGGTCGAGATTCTCAGCTCGGTAGAGTGGGTCCCACCAACATTCCATTGCCTGTGGACGGGCTTTTAGGTGAAAGCCTAGTCTCTGTGTCAGGCGGGCGTGTGCACACCATTGCTGTCACGGCTAGTGGTGAGGCGTATTCATGGGGGTGTGGTAGGAACGGGCGGCTTGGGCTGGGTAGTTCTGCGAACGAGCCCGAACCGATGTTGATTGAGTTTTCAGAAGGGGTTAATGTTTTGCAAGCGGTCGCAGGGTTTGATCATACTCTCGTTCTAACTAGCAAATAA | 1281 | 52.62 | MMLRALKTTASFTGRRRITTTVMGFGDGSHGALGLPTSVGIGSDAYEPTPISTLPPDVSTVAAGHYHSLAVTSDGHLWSWGRNVEHQLGRAIDSPRETWVEPGRVNGLNGVRLASASGVVSAAIRVDGSLWVWGKSKRGQLGLGTGITEAVVPSRVKVLEKEEIIKVSFGWGHALALTKDGKLFGWGYSADGRLGKRTIMGVSPLDSKANSSSSLKLEDAEKVVLEAMDKENSMPIIWEPCLVDELKGVEVADVSCGLDHTLVLLRDGTLLSGGSNAYGQLGRSTQDMEFRPVDISVYPVSIASGLGHSLAICRVPSAEGGGGISGIFSWGWGRDSQLGRVGPTNIPLPVDGLLGESLVSVSGGRVHTIAVTASGEAYSWGCGRNGRLGLGSSANEPEPMLIEFSEGVNVLQAVAGFDHTLVLTSK | 426 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 128 | 180 | IPR000408 | - | |
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 20 | 74 | IPR000408 | - | |
| Cobi4g03148 | 426 | Gene3D | - | 8 | 224 | IPR009091 | - | |
| Cobi4g03148 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 127 | 177 | IPR000408 | - | |
| Cobi4g03148 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 374 | 423 | IPR000408 | - | |
| Cobi4g03148 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 327 | 371 | IPR000408 | - | |
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 325 | 374 | IPR000408 | - | |
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 75 | 127 | IPR000408 | - | |
| Cobi4g03148 | 426 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 254 | 264 | IPR000408 | - | |
| Cobi4g03148 | 426 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 61 | 71 | IPR000408 | - | |
| Cobi4g03148 | 426 | Gene3D | - | 321 | 426 | IPR009091 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 21 | 37 | IPR000408 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 58 | 71 | IPR000408 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 77 | 93 | IPR000408 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 167 | 183 | IPR000408 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 370 | 391 | IPR000408 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 128 | 144 | IPR000408 | - | |
| Cobi4g03148 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 183 | 197 | IPR000408 | - | |
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 181 | 267 | IPR000408 | - | |
| Cobi4g03148 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 58 | 87 | - | - | |
| Cobi4g03148 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 251 | 280 | - | - | |
| Cobi4g03148 | 426 | Gene3D | - | 225 | 314 | IPR009091 | - | |
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 315 | IPR000408 | - | |
| Cobi4g03148 | 426 | SUPERFAMILY | RCC1-BLIP-II | 20 | 425 | IPR009091 | - | |
| Cobi4g03148 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 375 | 426 | IPR000408 | - | |
| Cobi4g03148 | 426 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 20 | 425 | IPR051210 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi4g03148 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cobi | Cobi-Chr4:81043814 | Cobi7g00349 | Cobi-Chr7:2906457 | dispersed | |
| Cobi | Cobi-Chr4:81043814 | Cobi5g02943 | Cobi-Chr5:80506588 | transposed |