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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03200 ATGTCATTGGCAGTTGAACAAGAACATCAAGACCAAACCAAGAATGGGTTTGAAGAACATGTGGAGGACAAACATAGCATGAAGAGAGTTGATAGTGAATCATCAGTTTATGAAACTGAAGATGAAGGTGAAGTTGATGATAATAATAATATTGAATTGGGTCCTCAATGCACCCTCAAGTCACAACTTGAGAAAGACAAGGATGATGAAAGCCTCAGAAAGTGGAAGGAACAACTTCTTGGAAATGTTGATATTAATGATGTTGGAGACTCACTCGAACCGGAAGTGAAAATAACGAGCTTATCGATATTGTCTCCGGGGAGACCTGACATTGTTCTTGCTATACCCGAAGATGGAAAACCGAAAGGGTTATGGTTTACGTTGAAAGAAGGTTGTCGTTACAGTTTGCGGTTTAAGTTTCAGGTTGGGCATAATATTGTTTCGGGTTTAAAGTACACCAGCAACGTATGGAGAACCGGTGTCAAAGTGGATAGAGTGAAACAAATGCTTGGAACTTTTAGTCCCCAACAAGAAGCATACACTTGTGACATGCCTGAAGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTATTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATCAACTATTCGTTCGATATCCGGAAAGATTGGGCCGGCCCTGAATCAACAAAAGCGTAA 705 40.28 MSLAVEQEHQDQTKNGFEEHVEDKHSMKRVDSESSVYETEDEGEVDDNNNIELGPQCTLKSQLEKDKDDESLRKWKEQLLGNVDINDVGDSLEPEVKITSLSILSPGRPDIVLAIPEDGKPKGLWFTLKEGCRYSLRFKFQVGHNIVSGLKYTSNVWRTGVKVDRVKQMLGTFSPQQEAYTCDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYSFDIRKDWAGPESTKA 234
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03200 234 Gene3D Coagulation Factor XIII, subunit A, domain 1 48 228 IPR024792 -
Cobi4g03200 234 SUPERFAMILY E set domains 33 226 IPR014756 -
Cobi4g03200 234 MobiDBLite consensus disorder prediction 11 36 - -
Cobi4g03200 234 Pfam RHO protein GDP dissociation inhibitor 39 225 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cobi4g03200 234 FunFam Rho GDP-dissociation inhibitor 1 49 228 - -
Cobi4g03200 234 PANTHER RHO GDP-DISSOCIATION INHIBITOR 29 226 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Cobi4g03200 234 MobiDBLite consensus disorder prediction 1 57 - -
Cobi4g03200 234 PRINTS RHO protein GDP dissociation inhibitor signature 86 101 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cobi4g03200 234 PRINTS RHO protein GDP dissociation inhibitor signature 163 178 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cobi4g03200 234 PRINTS RHO protein GDP dissociation inhibitor signature 205 222 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cobi4g03200 234 PRINTS RHO protein GDP dissociation inhibitor signature 146 162 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03200 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
71838 Cobi3g01220 Cobi4g03200
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:81579853 Cobi5g01923 Cobi-Chr5:51726460 dispersed
Cobi Cobi-Chr3:16124219 Cobi4g03200 Cobi-Chr4:81579853 wgd