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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03212 ATGGGTATCACCGGTGAACTTGTGCGAAACGCATTCTCAAAACATCGATCGTTCGGAACCACTCATGACACCAATGTAATGAGAAACAACCATGCAGAAAGAAAGAGATGGGCATCAGTTAGATCATATCTATGTGGTGATGAGTTAAGTTCGGTGTTGGCCGAGGAAGATTTAGGTTCTAGAAACTCAAAGTCAGTTGTTCTAGAAGATTATTCTTATTCTACTCGAACATCAAAAGCTACTGTTTTTAGTTCAAGATTTGATGATGATGATGAGTCAGCATCTGTCAAGGGTTCCGAGACTACTGTCACACAACCTATTTCTGATCAACAACACTCTAGTGTGACTGTTAATGATGATGGTGAAATTACCAAATTGCCCTCCCAAGATGAAGCTGCAATTGTTATTCAGTCAGCATTCAGAAGCTTTCTGGCTAGACGTGAAGTTAAACGAGTTGATTATATGGGTGATCGAGACCTTGAATCGGTTGCAACATCCGTGGAAGTGCAAACCGGTAACTCGGTGGTGGAGGTTAATGTTAAAGATGGTAGTGAAAGTTGTACACATCGTGTGAAGCATCACAAGAGTGTAAGAGTACGAACATCAAAGTTAAAGCCAAAAGATTGGGATGATAGCACTGTGAGTAGCAACATATCAAAAATGAGGCTTCAAAACAGACTAGAGGCCTCCACAAGGCGCGAAAGGGCACTCGCGTATGCTTTCTCACAACAGCTAAGGATATGCTCAAAGAAGAAGCAAAATGTGAGACCGGGCAACGATACACAAGCGAACATGAGTTGGAGTTGGCTCGAGCGATGGATGGCCACCCGACAACATGATACTTCTTTTGGGGATATAAGCAAACTAATGGTAAAAAGTAGAGTAATATCAGATTTAGCCGGTGAAGAGAAGGAGAGTTGTGGATCGAATGAAGTTTCTGTGCATTTCGACAACGTTTCTTTGAGCTCAAAATCGGCTGAAAAGGCTTACTCTAAGCCCGTTCGAAATTGGGTCAAGACTACAAATGTCGCAAGGCGAAAAAAGTCAACACGTTGCGGGTATGGTAACGAGTATAGTAAGGTGAACAAACAAGGTGAAAGAGAGATTAAATGTGAAGAGTAA 1122 41.98 MGITGELVRNAFSKHRSFGTTHDTNVMRNNHAERKRWASVRSYLCGDELSSVLAEEDLGSRNSKSVVLEDYSYSTRTSKATVFSSRFDDDDESASVKGSETTVTQPISDQQHSSVTVNDDGEITKLPSQDEAAIVIQSAFRSFLARREVKRVDYMGDRDLESVATSVEVQTGNSVVEVNVKDGSESCTHRVKHHKSVRVRTSKLKPKDWDDSTVSSNISKMRLQNRLEASTRRERALAYAFSQQLRICSKKKQNVRPGNDTQANMSWSWLERWMATRQHDTSFGDISKLMVKSRVISDLAGEEKESCGSNEVSVHFDNVSLSSKSAEKAYSKPVRNWVKTTNVARRKKSTRCGYGNEYSKVNKQGEREIKCEE 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03212 373 PANTHER IQ-DOMAIN 5-RELATED 198 324 - -
Cobi4g03212 373 Gene3D iswi atpase 129 159 - -
Cobi4g03212 373 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515(InterPro)
Cobi4g03212 373 ProSiteProfiles IQ motif profile. 129 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03212 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:81692220 Cobi2g00912 Cobi-Chr2:11060389 dispersed
Cobi Cobi-Chr4:81692220 Cobi12g00530 Cobi-Chr12:4582590 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi3g01016 ACH 36 205 IQD Protein family AT3G15050 44.199 2.66e-41 140.0
Cobi1g03522 . 1 307 IQD Protein family AT4G14750 34.694 9.86e-39 140.0
Cobi1g03613 . 5 100 IQD Protein family AT3G51380 51.613 1.96e-31 106.0
Cobi1g03811 ACH 1 272 IQD Protein family AT1G14380 42.268 1.83e-48 174.0
Cobi1g03872 . 1 414 IQD Protein family AT1G72670 41.06 7.68e-83 258.0
Cobi1g03934 ACH,WGDA 1 353 IQD Protein family AT3G16490 51.485 1.15e-92 282.0
Cobi1g04323 . 1 572 IQD Protein family AT1G18840 33.851 8.22e-66 218.0
Cobi11g00310 ACH,WGDA 1 435 IQD Protein family AT5G03040 43.488 4.55e-94 288.0
Cobi11g00476 ACH 1 451 IQD Protein family AT5G03040 54.077 1.91e-140 409.0
Cobi11g00742 ACH,WGDA 91 578 IQD Protein family AT1G74690 38.306 3.00e-69 231.0
Cobi11g02325 . 178 793 IQD Protein family AT1G19870 35.499 2.65e-87 288.0
Cobi11g02338 ACH 1 353 IQD Protein family AT3G16490 51.908 5.17e-86 265.0
Cobi11g02475 ACH 63 250 IQD Protein family AT3G15050 49.223 3.64e-64 198.0
Cobi9g00764 ACH 49 517 IQD Protein family AT3G59690 46.943 5.42e-132 390.0
Cobi6g01785 ACH,WGDA 1 353 IQD Protein family AT3G16490 41.604 6.99e-74 232.0
Cobi6g01470 . 1 280 IQD Protein family AT5G03040 37.631 3.40e-41 150.0
Cobi10g00190 . 128 534 IQD Protein family AT4G00820 44.988 8.64e-92 285.0
Cobi5g00915 . 1 259 IQD Protein family AT3G15050 43.796 1.41e-57 193.0
Cobi6g03624 ACH 160 481 IQD Protein family AT4G23060 37.822 7.25e-52 179.0
Cobi2g00258 WGDA 1 346 IQD Protein family AT1G19870 37.322 7.38e-52 192.0
Cobi10g01168 . 1 353 IQD Protein family AT3G16490 46.114 1.49e-63 206.0
Cobi12g01703 ACH,WGDA 150 478 IQD Protein family AT4G23060 38.192 2.24e-46 172.0
Cobi12g01103 ACH 1 449 IQD Protein family AT5G03040 44.805 1.50e-91 295.0
Cobi12g00697 ACH 1 516 IQD Protein family AT3G59690 36.625 2.29e-83 264.0
Cobi12g00661 ACH,WGDA 108 333 IQD Protein family AT5G07240 40.59 7.17e-39 141.0
Cobi12g00530 ACH,WGDA 1 379 IQD Protein family AT5G03040 41.686 3.17e-80 255.0
Cobi12g00387 WGDA 196 346 IQD Protein family AT1G19870 56.954 3.98e-47 178.0
Cobi6g00486 ACH 1 450 IQD Protein family AT5G03040 51.096 1.04e-127 374.0
Cobi6g00775 . 49 517 IQD Protein family AT3G59690 47.505 6.31e-130 386.0
Cobi6g00843 . 1 237 IQD Protein family AT3G15050 48.117 2.41e-69 213.0
Cobi2g00912 ACH,WGDA 107 435 IQD Protein family AT5G03040 43.44 5.11e-75 242.0
Cobi3g03611 . 1 330 IQD Protein family AT3G16490 41.04 1.94e-40 145.0
Cobi5g00422 WGDA 4 443 IQD Protein family AT5G13460 41.518 3.33e-95 290.0
Cobih2tg0040l_1g00063 . 128 534 IQD Protein family AT4G00820 45.721 1.54e-94 291.0
Cobih2tg0045l_1g00008 . 1 414 IQD Protein family AT1G72670 40.618 2.63e-81 254.0
Cobih2tg0045l_1g00066 . 1 353 IQD Protein family AT3G16490 51.99 3.38e-94 286.0
Cobi9g03126 ACH,WGDA 1 575 IQD Protein family AT1G74690 38.908 1.37e-84 272.0
Cobi1g00409 ACH 1 368 IQD Protein family AT4G14750 43.846 1.06e-70 223.0
Cobi3g00270 ACH 1 480 IQD Protein family AT4G23060 37.374 8.83e-52 179.0
Cobi9g02690 ACH,WGDA 1 433 IQD Protein family AT5G03040 44.42 3.03e-99 302.0
Cobi2g03461 ACH 1 450 IQD Protein family AT5G03040 42.418 1.89e-91 280.0
Cobi7g03052 . 1 392 IQD Protein family AT3G22190 44.0 1.25e-84 261.0
Cobi7g02292 WGDA 11 534 IQD Protein family AT4G00820 51.259 6.71e-149 434.0
Cobi4g01485 ACH 1 374 IQD Protein family AT4G14750 48.139 7.02e-94 285.0
Cobi8g02220 . 11 534 IQD Protein family AT4G00820 41.516 1.42e-108 330.0
Cobi6g03418 ACH,WGDA 1 397 IQD Protein family AT2G26180 58.605 8.50e-134 390.0
Cobi4g00285 WGDA 11 533 IQD Protein family AT4G00820 50.844 2.64e-143 419.0
Cobi10g01042 . 1 364 IQD Protein family AT5G03960 30.27 2.04e-21 92.0
Cobi1g00193 WGDA 1 388 IQD Protein family AT3G22190 53.75 3.90e-112 332.0
Cobi1g00185 WGDA 1 259 IQD Protein family AT3G22190 61.217 4.97e-88 269.0
Cobi2g01339 ACH,WGDA 52 352 IQD Protein family AT5G62070 46.269 2.30e-37 137.0
Cobi5g02562 WGDA 1 443 IQD Protein family AT5G13460 42.605 1.13e-90 278.0
Cobih2tg0362l_1g00002 . 110 450 IQD Protein family AT5G03040 48.266 3.19e-77 258.0
Cobih2tg0569l_1g00002 . 1 346 IQD Protein family AT1G19870 37.322 6.20e-52 192.0
Cobi9g01306 . 1 466 IQD Protein family AT3G49260 47.28 4.19e-97 297.0
Cobi9g02315 ACH 82 331 IQD Protein family AT5G07240 45.113 6.25e-45 156.0
Cobi4g03212 . 1 362 IQD Protein family AT5G35670 41.192 6.98e-69 221.0
Cobi4g03037 ACH 39 230 IQD Protein family AT3G15050 57.576 5.79e-74 225.0
Cobi4g02176 . 18 209 IQD Protein family AT1G72670 47.692 6.68e-48 162.0