AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03214 ATGCTTTCATCCATGACAATCACAAGCCCCATCTTCCCCCAATTCCACCAAAAACCCACAAAACCCCATGAATTTGGCCAAAAACCCCATCAAATTACAACCCTCCAAAAACCCACAAAAACCCATGAAATTGGCGCGAAATCTTCGAAAAATTCAGGGTTTTTATCAGCAATTGGGAACGCAATTGAAGAACAAGAGTACAGGAAAGCAAGGGCGGAAGTGGTGAGAAGAGGGATGGGAATTGAAGGGTATAATATTGAGGGAGTTTCGGTTGGTGGGCATGAGACATGTGTGATTGTTCCGGAGTTTAAATGTGTGTTTGATATTGGAAAGTGTCCTGGTAGAGCTGTTGCCATGAATTTCTTGTTTATTACTCATGCTCATCTTGATCACATTGGTGGGCTACCGATGTATATTGCAACTCGTGGTTTATATAGCATGCCTCCTCCAACTGTATTTGTACCTCCTTCGATTAAAGACGATGTTGAAGAGTTGATTGAGCTTCACAGGAAGATGGGTGACGTGGAGTTAAATGTCGATTTGGTTGCATTGGATGTAGGAGAAACATATGAGCTAAGAAACGATCTTGTTGTACGCCCGTTTAAAACTTATCATGTTATACCGAGTCAGGGTTATGTGATTTATTCGGTTAGGAAGAAACTTAAAAAACAATATGTTCACTTAAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGTGTTGAGATAACGGATATCATATTGTCACCGGAGGTGGCGTTCACAGGCGATACAAGCTCTGATTTTCTACTTGATCCACGAAGTTCTGATGCCTTGCGAGCCAAAGTTCTTATAACCGAGGCTACTTTTTTGGATGATAAATGCAGCATTGAGCATGCGCGAGAACATGGTCACATGCATATTGATGAGATTATCGAGCATTCTAAGTGGATTAGGAACAAGGCGATTCTTTTAACGCATTTCTCGTCACGCTACCACATCGAGGAAATTCGACAAGCCGTTACAAAGTTGCAGGCCAAGGTTCAAGCCAAAGTGGTGCCACTTACAGAAGGTTTTAGATCAATGTACACACCATAA 1077 41.69 MLSSMTITSPIFPQFHQKPTKPHEFGQKPHQITTLQKPTKTHEIGAKSSKNSGFLSAIGNAIEEQEYRKARAEVVRRGMGIEGYNIEGVSVGGHETCVIVPEFKCVFDIGKCPGRAVAMNFLFITHAHLDHIGGLPMYIATRGLYSMPPPTVFVPPSIKDDVEELIELHRKMGDVELNVDLVALDVGETYELRNDLVVRPFKTYHVIPSQGYVIYSVRKKLKKQYVHLKGREIEKKKKSGVEITDIILSPEVAFTGDTSSDFLLDPRSSDALRAKVLITEATFLDDKCSIEHAREHGHMHIDEIIEHSKWIRNKAILLTHFSSRYHIEEIRQAVTKLQAKVQAKVVPLTEGFRSMYTP 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03214 358 Gene3D - 84 353 IPR036866 -
Cobi4g03214 358 Pfam Beta-lactamase superfamily domain 118 321 IPR001279 -
Cobi4g03214 358 MobiDBLite consensus disorder prediction 1 15 - -
Cobi4g03214 358 SUPERFAMILY Metallo-hydrolase-oxidoreductase 96 336 IPR036866 -
Cobi4g03214 358 MobiDBLite consensus disorder prediction 1 28 - -
Cobi4g03214 358 PANTHER TRNASE Z TRZ1 31 352 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03214 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr1:90248733 Cobi4g03214 Cobi-Chr4:81709718 dispersed