AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03222 ATGGACGTCATCAATTCACTCAACATACGCGACCTATTATCCTCCCACACCGTCGACGACTCATCACCAATCTCTGCTCCCGACCTCCGCCTCGTAATCGACCGTCTCAACATCCAATCACTCAAACGCAAGTCCACACTCCACGACCTAATCCTCTCACACACCGACGAGTTTCACAACCTCTTCTCCAACTGCTCGGACACCGTCCGTAATTCCGAACAACTGTACGGACAAGTCACCGATCTCGTTAACCGGTTATCGCCGTCCGATCGGGAGGCGATAGATGTGGAGATTAAGGAAACGGTAGAGGAGATTAGGTTGAGAGGGATTGAGTTGAAGGAGAAGAAGGAGGCGTTAGGGTTAGTTAATATAATAGTGAAGTTGAGAGATGAGTTGAGTGGAGTTGAGGAGGATTTGGGGGATTGGAAGGTTGTTGAGGCGGCCGAGAGTGTTACGGAGTTGAAAGTGGCGTTGCGAGTCGAGGAGGATGGGACGGAGGGAGGTGAAGGCGAGCCGGTTGTGTTTGGGTTGTTGCGGAAGAAATGGATGGAGTGCTTTGAGAAGTTACAACAAGTGCTAGTCAAGTTCATTGAGAATGCAGTGAGATTTGATCAACAAACCAACTCTGTTCATGTGAAGAACACAATGTCTATGAATGATATTCAAGGGATTGAGCTTTGTACTGTTCTGAAAGCAATGCATGTTGTTGGTATTCTAGATTATGGGCTTGCTAAAGTAGCAGATTTGATGACCAGACATGTAATAACTCCTGCAGTGCGATCACTTTCCCACAGTTTTTCTGTAGAAGAAAAAAGATCAGATTCAGGAGATATAACTGAAGCAGTTTTGAGAATAATCCCACTTTCTGGTACTCAGGTTGAGAACATGGATGCTGAAAATCTTTATTCTGGAGTTAATGTGATCATTCAGTTTATTTTCAACCATATTTGCTTTCAAAATACTTCTTGGATGCATTTATTTGGAAGATTGACATGGCCCCACATGTCAGAATTGATTATTTCCAACTTCCTATCGAAGATTGTTCCTGATGATGCTTCCAAACTTTCTGACTTCCAAACAATAAGACAACTCACATCTGAGTTTGAAACGTCTCTTAAAGAAGTCAAGTTCATATCCTCTGATAAAGATCAAAGGTTGACTAATTTTACAGATAATGTTGAAGTTCACTTTGCAACAAGGAAGAAGGTTGAGATATTAGCAACAGCTAGAGACCTTCTTCTACATTCTGACTTTAAACTTCCTAAGGAGTATTCAAGGAAAAGTGAAGATATTAAAAATGGCGGGAATGTAGACTTGCTTTTCTCATCAGAGAGGTGTGCCATATCTGAAGCGGCTTCACAGCTATTGGAACTCGTGCATCAAACACTCAAGGATGTTTGCTTGTCATCCCCTACAGTTGCTTTAGAATTTTGCCATGCTGCCAGGGATGCTTTACTTTTGTATGAAGCTGTTATTCCCGTCAAGCTAGAAAGACAGCTGGATGGTATCAACCAGGTTGCTGTTCTAATTCATAATGATTGCCTCTTTCTATCTCAAGAGATTCTTGGCCTTAAATTTGAGTATCAGTCAGATTTCCCGCCTTCCATGAAAGGAGCTGTGTTCATTGATTTAGGTATAAGATACAAACTAATGGCGGAAGAGATATTACAAAGACAAATACACCTTGTTAAGCATAATTTAATGGAGGCGATCGACGGTGCCGATGGATTTCAAAACACCCATCAACCAAAACGATACGAGTCTGCAAAATTCACTATCGATCAGGTGGTTTTTATCCTTGAGAAAGTGCATATAATTTGGGAGCCGTTATTGTTACCGTTAACTTACAAAAGAAGCATGTGCACTGTTTTGGAGGCTGTATGCTCTAGAATGACTAAAGACATACTTCTTTTAGATGATATTGCAGCTGAAGAAACATTACAGATTCAAAGGTTAATTCAAATGTTACTGGAAAACCTTTCATCTTTATTGGAGTCACTGGTTAGTATTAAACAAACGACAAAAGCGCAAGAAGCATCACCAGCCTCTATTGATGATTTAATCCCGTCTCTCCCACAGTTACGAATACTGGCAGATATGTTGGACATGCCTCTAAAGACTATAACTGCATATTGGGAAAATGGTGAGCTGGCGAACTGTGGCTTTACGTCATCTGAGGTGAAAGACTTTATCAGAGCGATATTTGCGGATTCGCCCCTACGGAAAGAATGCCTGTGGAGGATTGAAAATATCAAGTTTTAG 2262 41.51 MDVINSLNIRDLLSSHTVDDSSPISAPDLRLVIDRLNIQSLKRKSTLHDLILSHTDEFHNLFSNCSDTVRNSEQLYGQVTDLVNRLSPSDREAIDVEIKETVEEIRLRGIELKEKKEALGLVNIIVKLRDELSGVEEDLGDWKVVEAAESVTELKVALRVEEDGTEGGEGEPVVFGLLRKKWMECFEKLQQVLVKFIENAVRFDQQTNSVHVKNTMSMNDIQGIELCTVLKAMHVVGILDYGLAKVADLMTRHVITPAVRSLSHSFSVEEKRSDSGDITEAVLRIIPLSGTQVENMDAENLYSGVNVIIQFIFNHICFQNTSWMHLFGRLTWPHMSELIISNFLSKIVPDDASKLSDFQTIRQLTSEFETSLKEVKFISSDKDQRLTNFTDNVEVHFATRKKVEILATARDLLLHSDFKLPKEYSRKSEDIKNGGNVDLLFSSERCAISEAASQLLELVHQTLKDVCLSSPTVALEFCHAARDALLLYEAVIPVKLERQLDGINQVAVLIHNDCLFLSQEILGLKFEYQSDFPPSMKGAVFIDLGIRYKLMAEEILQRQIHLVKHNLMEAIDGADGFQNTHQPKRYESAKFTIDQVVFILEKVHIIWEPLLLPLTYKRSMCTVLEAVCSRMTKDILLLDDIAAEETLQIQRLIQMLLENLSSLLESLVSIKQTTKAQEASPASIDDLIPSLPQLRILADMLDMPLKTITAYWENGELANCGFTSSEVKDFIRAIFADSPLRKECLWRIENIKF 753
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03222 753 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 6 750 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Cobi4g03222 753 Pfam Centromere-kinetochore protein zw10, middle domain 178 413 IPR048344 -
Cobi4g03222 753 Pfam Centromere-kinetochore protein zw10, C-terminal 441 569 IPR048343 -
Cobi4g03222 753 Gene3D - 546 752 IPR046362 -
Cobi4g03222 753 Pfam ZW10 C-terminal helical domain 592 748 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03222 K11578 protein transport protein DSL1/ZW10