AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03256 ATGACTGTTGAAGATGGAGTTGGACTTAAGAAGAGGAAAATCAACAAGCTGAATCAAATTTGGCAAACTGGATCAAATGAAGGGTATGCTAGAAGAAGTGATGGTGTTGATGATAATTTTAGGGATTTTGGTGGTGATGCTATTGGTCTAAAAAATTACTTGGATGCTCAGTATTATGGTGAGATTGGTATTGGTACTCCACCTCAAAAGTTCACAGTGGTTTTTGACACTGGTAGTTCTAATCTCTGGGTGCCTTCTGCAAAATGCTACTTCTCCGTAGCTTGCCTGCTTCACCCAAAGTATAAGTCTAGCCAGTCAAGTTCCTACAAGAAAAACGGGAAATCTGCAGCAATTCATTATGGAACAGGCTCCATCTCTGGTTTTTTTAGCAAAGATTACATCACACTTGGTGATCTTGTTGTAAAAGAGCAAGATTTTATAGAGGCAACCAGAGAGCCCGGTGTCACCTTTGTAGCAGCCAAGTTTGATGGTATACTTGGCCTCGGGTTTAAAGAAATCTCTGTTGGGGATGCGGTTCCTGTTTGGTATAACATGATAACACAAGGTCTTGTTCATGAACCCGTGTTTTCATTTTGGCTTAATCGCAACGCTGAAGACCAGGATGGGGGTGAACTTGTGTTTGGTGGGGTTGACACGAATCACTTCAGGGGTGAGCACACATATGTCCCTGTAACTCAGAAAGGGTATTGGCAATTTGAAATGGGTGATGTTTTGATTAATGGTAGACCAACCGGATTTTGTGCCAAGGGTTGTGCTGCTATTGCTGATTCTGGAACCTCTTTGTTGGCTGGACCAACAGAAGTTATTACTAAAATCAATCAAGCAATTGGTGCTGTTGGTGTTATGAGCCAACAATGCAAGACATTTGTCAATCACTATGGAAAAACTATAATTGAACTGCTACTTACTGAGACGCGACCTGAAATGGTCTGCTCTCAAATGAACTTATGCTCTGTTGATGGTTCTCGTGATACAAGCATGATAATTGAAAGTGTGGTTGACAAGAATAATGGAAAGTCATCTGGTGTTGGTGATCCAATGTGTACTCTCTGCGAGACGGCTGTTGATTGGATGGAAACCAGAATACAGAGAAATGAAACCGAAGAAGACATAATTAACCATGTTGGTCAGCTGTGTGAACGGATACCGAGTCCAATGGGAGAATCCGGAGTCAATTGCAACAGTCTCTCTAAAATGCCCAATATTGCTTTTACCATTGGCTGTAAAGCTTTTAATCTCTCACCTGAAGATTACATTCTGAAAATTGGAGAGGGTGCATCAGCACAATGCATCAGTGGATTTACCGCTCTTGACGTGGACCCTCCTCGTGGGCCCCTGTGGATCCTGGGTGATATATTTATGGGTAAATATCATACGGTGTTCGACTATGGCCGATTACAAGTTGGGTTTGCAGACGCAGTTTAA 1446 42.19 MTVEDGVGLKKRKINKLNQIWQTGSNEGYARRSDGVDDNFRDFGGDAIGLKNYLDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSAKCYFSVACLLHPKYKSSQSSSYKKNGKSAAIHYGTGSISGFFSKDYITLGDLVVKEQDFIEATREPGVTFVAAKFDGILGLGFKEISVGDAVPVWYNMITQGLVHEPVFSFWLNRNAEDQDGGELVFGGVDTNHFRGEHTYVPVTQKGYWQFEMGDVLINGRPTGFCAKGCAAIADSGTSLLAGPTEVITKINQAIGAVGVMSQQCKTFVNHYGKTIIELLLTETRPEMVCSQMNLCSVDGSRDTSMIIESVVDKNNGKSSGVGDPMCTLCETAVDWMETRIQRNETEEDIINHVGQLCERIPSPMGESGVNCNSLSKMPNIAFTIGCKAFNLSPEDYILKIGEGASAQCISGFTALDVDPPRGPLWILGDIFMGKYHTVFDYGRLQVGFADAV 481
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03256 481 Gene3D Acid Proteases 6 216 IPR021109 -
Cobi4g03256 481 PRINTS Pepsin (A1) aspartic protease family signature 454 469 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cobi4g03256 481 PRINTS Pepsin (A1) aspartic protease family signature 210 223 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cobi4g03256 481 PRINTS Pepsin (A1) aspartic protease family signature 260 271 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cobi4g03256 481 PRINTS Pepsin (A1) aspartic protease family signature 64 84 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cobi4g03256 481 ProSiteProfiles Saposin B type domain profile. 351 392 IPR008139 -
Cobi4g03256 481 FunFam Lysosomal aspartic protease 44 286 - -
Cobi4g03256 481 ProSiteProfiles Peptidase family A1 domain profile. 58 478 IPR033121 -
Cobi4g03256 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 73 84 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cobi4g03256 481 Pfam Eukaryotic aspartyl protease 57 479 IPR033121 -
Cobi4g03256 481 ProSiteProfiles Saposin B type domain profile. 288 328 IPR008139 -
Cobi4g03256 481 SUPERFAMILY Saposin 289 390 IPR011001 -
Cobi4g03256 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 260 271 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cobi4g03256 481 Pfam Saposin-like type B, region 1 353 390 IPR007856 GO:0006629(InterPro)
Cobi4g03256 481 Pfam Saposin-like type B, region 2 291 324 IPR008138 -
Cobi4g03256 481 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 40 480 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Cobi4g03256 481 Gene3D Acid Proteases 217 480 IPR021109 -
Cobi4g03256 481 Gene3D - 288 390 - -
Cobi4g03256 481 FunFam Lysosomal aspartic protease 324 480 - -
Cobi4g03256 481 SUPERFAMILY Acid proteases 41 480 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03256 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71846 Cobi3g01258 Cobi4g03256
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:44849938 Cobi4g03256 Cobi-Chr4:82329748 dispersed
Cobi Cobi-Chr4:82329748 Cobi5g01086 Cobi-Chr5:13503324 dispersed
Cobi Cobi-Chr4:69140216 Cobi4g03256 Cobi-Chr4:82329748 transposed
Cobi Cobi-Chr3:16704465 Cobi4g03256 Cobi-Chr4:82329748 wgd