AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03273 ATGGAGCTCCGGTCAATCCACTCGCCGGTCGTTAGTAGCATACCTACTACTAAAGCCTCAATTGAAAACCGTCAGCTACAATGCTACCGCCAGTTAATCAGATCGTTCGGTACGAACAGAGTTGTTCAATCGAATTCAAATGCGGTTAGGTTTAAACCGGTCCGGTTCAACGTTCAGGCGTCAGCAACAGTTGGTTTGCAGCCTGCTGAAACAAAAGCAAAAGATGGTGAGAAAGATGAAAATCTCATATTCGTTGCAGGAGCAACGGGCAAAGTTGGTTCACGAACAGTAAGGGAGCTTTTGAAGTTAGGATTTAATGTTCGAGCTGGTGTAAGAAGTACTCAAAGAGCGGAATCTTTGGTGAAGAGCGTGCAGCAGATGAAGCTTGATGGAAGTCAGCCTATAGAGAAGCTTCAACTTGTGGAGTGTGATTTGGAGAAACCAGAGCAAATTAAGCCTGCATTGGGCAATGCTTCAACAGTTATATGTACCATTGGTGCGAGTGAGAAGGAAGTATTTGATGTTACTGGGCCCTACCGAATTGACTTTCAAGCCACTAAAAACCTTATTGATGCAGCTGCTGCTGCAAAAGCGAAACACTTTATTTTGGTTACTTCTTTGGGAACTAACAAGTTTGGATTTCCTGCTGCTGTATTGAATTTGTTTTGGGGTGTCCTATGTTGGAAAAGGAAGGCTGAAGAAGCACTGCTTGCTAGTGGGATTCCTTACACTATAGTGAGGCCTGGAGGCATGGAGCGTCCTACAGATTCCTTCAAGGAAACACATAATCTTACCCTCTCTCTAGAAGATACTTTATTTGGCGGTCTAGTTTCAAATTTACAGGTGGCAGAACTCCTTGCGTTTATGGCTAAAAACCCCAATCTTTCATATTGTAAAGTAGTTGAAGTAGTTGCAGAAACAACAGCACCATTGACCCCCATGGGTGATCTCTTAACAAAAATACCACCTCAACGCCCCATACCTCCCCAACCTAAGGAGCCGGAGGCTATCAAAGAACCTGAACCTGTTTCCAAAAGCACCATAATTGAGACTTCAAGCGTTGTCACTGAACCACAAGCCGAGTCAAAAATTGCTTCCACAAGACCACTTTCTCCATATACCGCCTATGAAGGTTTGAAACCACCTTCATCTCCAACTCCATCTGGCGGCAGTAAGGCGATAGTTGAAGCAGTAGCAGCTCCCCCTACTGTTCCTGAAACTAGCACACAAGTGGAAACAGATACTGTTACAACCGAACCTGCACCCGTGGCTGCAGAATTGCCGAAAACCAGACCCCTCTCTCCTTATACCGCCTATGAAGGTTTGAAACCACCTTCATCCCCAACTCCATCAGGCGGCAGTAAAGCGGTGGTTGAAGCAGTATCAGCTCCTCCTACTGTTCCTGAAACTAGCACACAAGTGGAAACAGTTACGATTACAACCGAACCTCCACCATTGGCTGCAGAATTGCCGAAACCCAGGCCTCTCTCTCCTTATACTGCATATGAAAATCTGAAGCCTCCTTCATCACCAAGTCCAAGTAAACCATCAGTATCACCGCCACCAACATCCATTGTAGATAACGGGTCTCCCATTGCTCCCACACCCGAAGACACCACAGATCACACAACAGTGAAACCGAGGCCACTTTCACCGTATCACATGTATGAAAACTTGAAGCCTCCTAGTTCTCCTACACCTTCTGCTCCTAAATAA 1716 45.69 MELRSIHSPVVSSIPTTKASIENRQLQCYRQLIRSFGTNRVVQSNSNAVRFKPVRFNVQASATVGLQPAETKAKDGEKDENLIFVAGATGKVGSRTVRELLKLGFNVRAGVRSTQRAESLVKSVQQMKLDGSQPIEKLQLVECDLEKPEQIKPALGNASTVICTIGASEKEVFDVTGPYRIDFQATKNLIDAAAAAKAKHFILVTSLGTNKFGFPAAVLNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDSFKETHNLTLSLEDTLFGGLVSNLQVAELLAFMAKNPNLSYCKVVEVVAETTAPLTPMGDLLTKIPPQRPIPPQPKEPEAIKEPEPVSKSTIIETSSVVTEPQAESKIASTRPLSPYTAYEGLKPPSSPTPSGGSKAIVEAVAAPPTVPETSTQVETDTVTTEPAPVAAELPKTRPLSPYTAYEGLKPPSSPTPSGGSKAVVEAVSAPPTVPETSTQVETVTITTEPPPLAAELPKPRPLSPYTAYENLKPPSSPSPSKPSVSPPPTSIVDNGSPIAPTPEDTTDHTTVKPRPLSPYHMYENLKPPSSPTPSAPK 571
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03273 571 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 570 IPR044719 -
Cobi4g03273 571 Pfam NAD(P)H-binding 87 293 IPR016040 -
Cobi4g03273 571 CDD SDR-a5 83 307 - -
Cobi4g03273 571 Gene3D - 79 321 - -
Cobi4g03273 571 MobiDBLite consensus disorder prediction 465 480 - -
Cobi4g03273 571 MobiDBLite consensus disorder prediction 403 417 - -
Cobi4g03273 571 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 321 IPR036291 -
Cobi4g03273 571 MobiDBLite consensus disorder prediction 375 571 - -
Cobi4g03273 571 MobiDBLite consensus disorder prediction 521 540 - -
Cobi4g03273 571 MobiDBLite consensus disorder prediction 315 343 - -
Cobi4g03273 571 FunFam Protein TIC 62, chloroplastic 79 324 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03273 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:82488849 Cobi6g03972 Cobi-Chr6:77224250 dispersed