AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03287 ATGGCTTCTTATTCTTTAAGTTGCAGCTTCATCTTCTATGCTCTATTCCTCATACATCTTTGCAACGCGCGTGAAATCGTCGACAAAGGCCAAAACAACGATCACAACGACGAAAACCCTATAAATATTTACGGGAAGAACGATATTTATGATTTGGACCCGGCTCTAAATGTGTTCTTTCATGTAAATGATTTATATTCAGGCAAAAAAATGCCAATTTATTTCGCGGTAAACGATCCTTCAACAACTCCTAGGTTGTTAACACGAGAAAAATCCGATTCGATACCATTTTCGTCCCAAAAACTCGCGTACCTTCTCGAGCTTATTTCATTAACCGAGGGCTCGCCACAAGCCTTAGCCATGGAACAAACACTTAAACAGTGTGAGCTTGAGGCAACCCCTGGTGAGACAAGGTTTTGTGCTAGCTCTTTAGAGTCAATGCTTGATTTGACACGTGGCATATTGGGTATGGTCAAACTAAAGGCGTTGACCACCAATATTCATAACATGTCAAATACTATTTTGCAAGAGTATACTTTTTTAAAGGAGCCATTGGAGATTAATGTTAATGATTTGGTGGCTTGTCACACTATGGCTTATCCTTATACTGTTTATTATTGTCATGGTCAAAAGGGGTATAATAGGGTTTTTGAGATTTCTTTAGGGGGTGAAAATGGAAATATAGTGGACGCTATCGCTGTCTGCCACATGGACACTTCCAACTGGGATAGTGATCACGTGGCGTTTCGTGTGCTTGGAGGCCATCCTGGCAGCTCGCCGGTGTGTCATTTTCTCCCCGCTGATAATATTGTGTGGATATCGTGA 825 41.33 MASYSLSCSFIFYALFLIHLCNAREIVDKGQNNDHNDENPINIYGKNDIYDLDPALNVFFHVNDLYSGKKMPIYFAVNDPSTTPRLLTREKSDSIPFSSQKLAYLLELISLTEGSPQALAMEQTLKQCELEATPGETRFCASSLESMLDLTRGILGMVKLKALTTNIHNMSNTILQEYTFLKEPLEINVNDLVACHTMAYPYTVYYCHGQKGYNRVFEISLGGENGNIVDAIAVCHMDTSNWDSDHVAFRVLGGHPGSSPVCHFLPADNIVWIS 274
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03287 274 ProSiteProfiles BURP domain profile. 59 274 IPR004873 -
Cobi4g03287 274 Pfam BURP domain 58 273 IPR004873 -
Cobi4g03287 274 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 38 273 IPR044816 -
Cobi4g03287 274 SMART BURP-2 57 274 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03287 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
71860 Cobi3g01327 Cobi4g03287
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:19124031 Cobi4g03287 Cobi-Chr4:82748326 dispersed
Cobi Cobi-Chr3:19177399 Cobi4g03287 Cobi-Chr4:82748326 dispersed
Cobi Cobi-Chr4:82748326 Cobi4g03289 Cobi-Chr4:82770499 proximal
Cobi Cobi-Chr7:61512349 Cobi4g03287 Cobi-Chr4:82748326 transposed
Cobi Cobi-Chr3:18918277 Cobi4g03287 Cobi-Chr4:82748326 wgd
Cobi Cobi-Chr4:82748326 Cobi6g01220 Cobi-Chr6:9884222 wgd