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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03299 ATGGCCGCCATTTTAGCTCGCAAATCGATCTCAGCTATCCGTAATCGACAGCTTGTTTTGGCAGTTTCTGGTGCACGTTCGTTTGCTACCAAACACTCATTCTCAACTGATAAAGATGATGAGGAAAGAGAACAGCTTGCGAAGGAGATCTCAAAAGACTGGAGTTCTGTTTTCGAGCGGAGCATTAATACATTATTTCTAACTGAATTGGTTCGAGGTCTGTCTCTGACACTCAAATACTTCTTCGATCCAAAAGTTACCATTAATTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGGTTTCGAGGAGAACATGCTCTCAGGCGTTATCCAACTGGAGAAGAACGTTGTATTGCATGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCTATCACTATAGAAGCAGAGGAACGAGAAGATGGCAGCCGTAGAACAACAAGGTATGACATTGATATGACAAAGTGTATATACTGCGGATTCTGCCAAGAAGCGTGCCCTGTTGATGCAATCGTCGAAGGCCCCAACTTTGAGTTTGCTACCGAAACCCACGAGGAACTCTTGTATGACAAGGAGAAGCTACTTGAAAACGGGGATCGATGGGAAACTGAGATTGCTGAGAACCTTAGGTCCGAGAGCCTTTATCGATAA 651 44.24 MAAILARKSISAIRNRQLVLAVSGARSFATKHSFSTDKDDEEREQLAKEISKDWSSVFERSINTLFLTELVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 216
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03299 216 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 49 216 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Cobi4g03299 216 Pfam 4Fe-4S dicluster domain 116 170 IPR017896 -
Cobi4g03299 216 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 64 200 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Cobi4g03299 216 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 108 137 IPR017896 -
Cobi4g03299 216 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 156 167 IPR017900 -
Cobi4g03299 216 FunFam NADH-quinone oxidoreductase subunit I 1 90 213 - -
Cobi4g03299 216 SUPERFAMILY 4Fe-4S ferredoxins 90 200 - -
Cobi4g03299 216 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 117 128 IPR017900 -
Cobi4g03299 216 Gene3D - 90 215 - -
Cobi4g03299 216 NCBIfam NADH-quinone oxidoreductase, chain I 73 194 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Cobi4g03299 216 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 147 176 IPR017896 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03299 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Cobi4g03299 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71857 Cobi3g01316 Cobi4g03299
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:18598647 Cobi4g03299 Cobi-Chr4:83094137 wgd