Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cobi4g03316	ATGGCCAAAAATTCAGTTGCTTGTTTTGCATTTCTTCTGCTTCTTTTCGTTCTTGCTATATCAGAAATCGGATATGTGAACGGAGCATTGTGTGAGAAGGCAAGCCAGACATGGTCCGGAAATTGTGGCAACACAGGACATTGTGATAACCAGTGCCAGACATGGGAGGGGGCGGCTCATGGAGCTTGTCACGTGCGCGGTGGGAAACACATGTGCTTCTGTTATTTCAACTGTCCCCAAGCCCAGAAGTTGGCTGAGGATAAACTCAGAGCACAACAGCTTGCCAAAGAGAAGGTTGGAGCTAAAAATGTGTCAGCAACACCTTGA	327	47.4	MAKNSVACFAFLLLLFVLAISEIGYVNGALCEKASQTWSGNCGNTGHCDNQCQTWEGAAHGACHVRGGKHMCFCYFNCPQAQKLAEDKLRAQQLAKEKVGAKNVSATP	108

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cobi4g03316	108	ProSitePatterns	Gamma-thionins family signature.	29	52	IPR008176	GO:0006952(InterPro)
	Cobi4g03316	108	SUPERFAMILY	Scorpion toxin-like	30	78	IPR036574	-
	Cobi4g03316	108	SMART	gth-4	30	78	IPR003614	GO:0006952(InterPro)
	Cobi4g03316	108	Pfam	Gamma-thionin family	30	78	-	-
	Cobi4g03316	108	PANTHER	DEFENSIN-LIKE PROTEIN 1	1	78	-	GO:0006952(PANTHER)
	Cobi4g03316	108	Gene3D	-	30	78	IPR036574	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cobi4g03316	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cobi	Cobi-Chr4:83330624	Cobi6g01228	Cobi-Chr6:9949913	dispersed
	Cobi	Cobi-Chr4:83320671	Cobi4g03316	Cobi-Chr4:83330624	tandem

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cobi1g02980	.	12	77	Plant Defensins gene family	AT2G02130	42.424	3.16e-12	54.3
	Cobi1g02981	.	10	76	Plant Defensins gene family	AT1G61070	37.313	2.04e-12	54.7
	Cobi1g02983	.	9	61	Plant Defensins gene family	AT5G63660	30.909	5.90e-06	38.5
	Cobi2g00330	WGDA	1	77	Plant Defensins gene family	AT2G02130	60.256	4.46e-30	99.8
	Cobi12g00339	WGDA	1	77	Plant Defensins gene family	AT2G02120	59.494	1.08e-30	102.0
	Cobi6g01227	.	24	78	Plant Defensins gene family	AT1G19610	50.909	2.42e-12	58.9
	Cobi6g01228	.	6	78	Plant Defensins gene family	AT1G19610	43.836	4.53e-18	72.4
	Cobih2tg0044l_1g00001	.	1	78	Plant Defensins gene family	AT1G19610	48.718	5.53e-23	83.2
	Cobi8g02780	.	2	77	Plant Defensins gene family	AT2G02130	55.263	7.93e-23	81.3
	Cobi4g03310	.	12	66	Plant Defensins gene family	AT1G19610	52.727	2.50e-18	71.2
	Cobi4g03311	.	19	78	Plant Defensins gene family	AT1G19610	48.333	3.60e-17	73.9
	Cobi4g03313	.	7	78	Plant Defensins gene family	AT1G19610	33.784	3.16e-08	47.0
	Cobi4g03314	.	6	76	Plant Defensins gene family	AT1G19610	43.243	4.30e-11	57.0
	Cobi4g03315	.	1	78	Plant Defensins gene family	AT1G19610	51.282	2.54e-26	91.7
	Cobi4g03316	.	1	78	Plant Defensins gene family	AT1G19610	47.436	1.53e-22	82.0
	Cobi7g00167	.	3	73	Plant Defensins gene family	AT5G63660	61.111	8.45e-26	88.6