AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03359 ATGGACATACAACTAATAACACCCTCACCAACAATCACCACCACCAATTTCTACTATAGTGCACCCACAACCCCAATCCACACCACCTTCCAACCCGATAACTATGACGAATTCGCATTCGATTATAGTGGACCGCTAGACCCCCTTTTAATCCCCGACGCCGACGAACTCTTTCATTGCGGTCAAATCAAGACCACATCATTTTCTCGGGAATTAAAATCCGATTATTTCATTGAGGCATTTCATCGAACACCTGGCGCTCAAACTCAACCCGCCCAAAAAAAACCCGATAACTTCACCAAGGCATTTTATAAAACACGTGGAGGTAAAACCCAACTCACCCGAAACCCACCCAAACGAGGAAGCGAAACAAACGTCGGAAAAGATTCCGATTATTTCATTGAGGCATTTTATCGAACACCTGGCGGTCAAACCCACCCCACTCAAAACCCACCCAAACGAAGAACCGAAACAACCACCGAAAAAGATTCCGAATATTTAATTGAGACATTTTATCAAACACCTATCGGTAAAACCCAACTCACCCAAAACCCAACAACCAGAGAAAAAGATACCGATTATTTCATTGAGGCATTTCATCGAACACCTGGCAGGCAAACACAAACCCCACCCAAACGAACCGGAGACAAAGCATCACGGTCCTCATCTCCGTTCCGGGTATCCGATATTCTCGCCGGAGAAGATAACAATCAGAAAGCTTGGTATAATAAGTGGAACCTTAAGAACTTGTTACTGTTTAGAAGCACATCAGAGGGGAGTGGTAGAAGAAGGAAAGAGGTGGTTAATAAATACTCGAGAATAAGAAGTGCGGATGGTTGTCGGAGAGGGGTGTCGGCGCATGAAATGCATTACACGGCGAATAGGGCGGTGGCCGAGGAGATGCGCCGGAAGACGTACTTGCCGTACAAGTCGGGGGTGTTGGGTTGTTTAGGATGA 957 45.98 MDIQLITPSPTITTTNFYYSAPTTPIHTTFQPDNYDEFAFDYSGPLDPLLIPDADELFHCGQIKTTSFSRELKSDYFIEAFHRTPGAQTQPAQKKPDNFTKAFYKTRGGKTQLTRNPPKRGSETNVGKDSDYFIEAFYRTPGGQTHPTQNPPKRRTETTTEKDSEYLIETFYQTPIGKTQLTQNPTTREKDTDYFIEAFHRTPGRQTQTPPKRTGDKASRSSSPFRVSDILAGEDNNQKAWYNKWNLKNLLLFRSTSEGSGRRRKEVVNKYSRIRSADGCRRGVSAHEMHYTANRAVAEEMRRKTYLPYKSGVLGCLG 318
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03359 318 MobiDBLite consensus disorder prediction 202 225 - -
Cobi4g03359 318 MobiDBLite consensus disorder prediction 199 225 - -
Cobi4g03359 318 MobiDBLite consensus disorder prediction 108 162 - -
Cobi4g03359 318 PANTHER OS07G0619500 PROTEIN 9 318 - -
Cobi4g03359 318 MobiDBLite consensus disorder prediction 108 123 - -
Cobi4g03359 318 Pfam Protein of unknown function (DUF1645) 54 308 IPR012442 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03359 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:21465083 Cobi4g03359 Cobi-Chr4:83889496 dispersed
Cobi Cobi-Chr4:83889496 Cobi6g02226 Cobi-Chr6:18049043 dispersed
Cobi Cobi-Chr1:72025615 Cobi4g03359 Cobi-Chr4:83889496 wgd
Cobi Cobi-Chr11:71736044 Cobi4g03359 Cobi-Chr4:83889496 wgd
Cobi Cobi-Chr4:83889496 Cobi6g01207 Cobi-Chr6:9797402 wgd