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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03374 ATGGCTGAATTTAACCTCAAACGACAACCTCCGATTCTCTCGAAACAGCGCTCGTGGTCACCCGACATCCACCGCGACATCGAATGGCAGAAGCTTAAGAAAAATCAACGACTCCGCCGGAGTAAGAGTATCGGAGATGCTGCCGGAGCTGACGTCACCGATGATGATGTGAAGGAATTGAGAGCTTGCTTTGAATTGGGTTTCGGGTTTGATTTGTCAACTGATTTGGACCCAAAACTTATTAAAGCGTTTCCCGCGCTTGAGTTTTATGCGGCGGTTAAGCGGGGGGTGAACGGTGGAGGAGTTGTGTTGTCGAGGTGTTCGTCTTTGAGTTCGGATTCATCGTCGAGTTCAACAAATTCGACGTCCGCATTTATTGATCCAGGTGATGATCCAAAAAAGGTGAAGATGAAATTGAAACAATGGGCACAGCTTGTTTCATGCTCAGTTCTAGAAGCTTCTTCTCAGTTAGCTAATAATAATAATAACAAACATGCAGCAGAAAAGGAAAGTATAATTTCATGA 525 44.76 MAEFNLKRQPPILSKQRSWSPDIHRDIEWQKLKKNQRLRRSKSIGDAAGADVTDDDVKELRACFELGFGFDLSTDLDPKLIKAFPALEFYAAVKRGVNGGGVVLSRCSSLSSDSSSSSTNSTSAFIDPGDDPKKVKMKLKQWAQLVSCSVLEASSQLANNNNNKHAAEKESIIS 174
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03374 174 Pfam Protein of unknown function (DUF1685) 52 99 IPR012881 -
Cobi4g03374 174 PANTHER OSJNBA0071G03.3 PROTEIN 13 151 - -
Cobi4g03374 174 Coils Coil 150 170 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03374 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
71877 Cobi3g01562 Cobi4g03374
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:28578135 Cobi4g03374 Cobi-Chr4:84063446 dispersed
Cobi Cobi-Chr4:84063446 Cobi8g02279 Cobi-Chr8:72866160 dispersed
Cobi Cobi-Chr1:94980828 Cobi4g03374 Cobi-Chr4:84063446 wgd
Cobi Cobi-Chr4:84063446 Cobi6g01191 Cobi-Chr6:9663745 wgd