AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi5g00102 ATGCAAATGACTCCTTCCTTCTACAAGATCTTGCTCGACCCATCCGCCCGCCACTTGTCATTACCACATGAGTTTGTGAGCAAACATTTAAAGAAAAAAATCCCCCATGCACCAATAATCCGATCGGCTAACGGAGGGTATTCGTGGCGGGTAAATATCAAACACATTAATAATAGTTACTGTTTTACCAATGGATGGAACATGGTGGTTAAAGAGAGTCAATTGGGGTTTGGAGATCTTCTTTTCTTTCGGCTTGTTGATCGAACCGCCTTTGAAATGAACATCTATAGCCCGAACGGGTGTGAAATAACTTTGCCACCAAAAAATGAACATGATGATCCTATATTTATGCCAATTCTCACTAAAGGCTACAGAGATCGGTTGCGGTTTCCACCGGAGTTTGTAGCGTTGGCGGGAATAGATGGTGAAGGAACCATGACGGTAAAGAATCTTGACGGAAGAGAATGGGTTACGGGTTTGAAGTTGGATAAATCGTATAAATCGGAAAGGTATTATTTGGCTTCTGGGTGGCGTAGGTTCTGGCGAGAAAATAAGTTATCAATAGGAGATGAATGTGTATTCAAGTTCATTAGAAGTGAAGGTAAGTTATTACTAGCGGAAGTCACCAAGAAAAAATACATCTTTGAAATATCAACCTATGGCCCACATTGTCGTGAAAAAAGATTGTTACCCGAAATTGGGTATGATGGCGGTAGCGATGATGAGGAAGAAGAGAGAGAAGATAATGATTCTGATTACGATTATGTTGATTATGACTATGTGGATTATGATTATGTTGACTACGATGACGACGACGATGATAATGATGATGATGATTATGAAAAGAATAAAGAGAATAATGATGATGATCCTTTCTTTAGGCAGATTCTCACTAAAAGCTACAAAGATCGGTTGCGGTTTCCGAAGGAGTTTGCAACGTTGGCTGGAATAGATGGTGAAGGAACCATGACACTGAAGAATGTTGATGGAAGAGAATGGGTTTTGGGTTTGAGGTTGGATCATTCGTACAGAGCAACGAATAGGTACCTTTTGTCGTCTGGGTGGGGTAGGTTCTGGCGAGAAAATAAGTTATCGATAGGAGATAAATGTGTATTCAAGTTCATTAGAAGTGAAGGTAAGTTGTTACTAGCAAAAGTCACCAAGACAAAAATGGTCGAAGTTTTGGTGGATAAGGTTGTGAAAAGGCGACGATGGTTATGA 1221 40.21 MQMTPSFYKILLDPSARHLSLPHEFVSKHLKKKIPHAPIIRSANGGYSWRVNIKHINNSYCFTNGWNMVVKESQLGFGDLLFFRLVDRTAFEMNIYSPNGCEITLPPKNEHDDPIFMPILTKGYRDRLRFPPEFVALAGIDGEGTMTVKNLDGREWVTGLKLDKSYKSERYYLASGWRRFWRENKLSIGDECVFKFIRSEGKLLLAEVTKKKYIFEISTYGPHCREKRLLPEIGYDGGSDDEEEEREDNDSDYDYVDYDYVDYDYVDYDDDDDDNDDDDYEKNKENNDDDPFFRQILTKSYKDRLRFPKEFATLAGIDGEGTMTLKNVDGREWVLGLRLDHSYRATNRYLLSSGWGRFWRENKLSIGDKCVFKFIRSEGKLLLAKVTKTKMVEVLVDKVVKRRRWL 406
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi5g00102 406 CDD B3-DNA 5 97 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 Gene3D - 273 392 IPR015300 -
Cobi5g00102 406 MobiDBLite consensus disorder prediction 236 250 - -
Cobi5g00102 406 Gene3D - 1 101 IPR015300 -
Cobi5g00102 406 Gene3D - 108 212 IPR015300 -
Cobi5g00102 406 ProSiteProfiles B3 DNA-binding domain profile. 290 389 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 SUPERFAMILY DNA-binding pseudobarrel domain 112 205 IPR015300 -
Cobi5g00102 406 CDD B3-DNA 114 203 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 MobiDBLite consensus disorder prediction 269 290 - -
Cobi5g00102 406 CDD B3-DNA 291 381 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 ProSiteProfiles B3 DNA-binding domain profile. 4 99 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 SMART B3-2 7 99 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 SMART B3-2 293 389 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 SMART B3-2 116 209 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 ProSiteProfiles B3 DNA-binding domain profile. 113 211 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 4 380 IPR039218 -
Cobi5g00102 406 SUPERFAMILY DNA-binding pseudobarrel domain 4 105 IPR015300 -
Cobi5g00102 406 Pfam B3 DNA binding domain 299 382 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 Pfam B3 DNA binding domain 123 204 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 Pfam B3 DNA binding domain 17 95 IPR003340 GO:0003677(InterPro)
Cobi5g00102 406 MobiDBLite consensus disorder prediction 269 284 - -
Cobi5g00102 406 MobiDBLite consensus disorder prediction 231 250 - -
Cobi5g00102 406 SUPERFAMILY DNA-binding pseudobarrel domain 288 383 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi5g00102 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr5:1760010 Cobi5g00102 Cobi-Chr5:1765925 dispersed
Cobi Cobi-Chr5:1765925 Cobi5g02890 Cobi-Chr5:79779679 dispersed
Cobi Cobi-Chr5:1761416 Cobi5g00102 Cobi-Chr5:1765925 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi10g02883 ACH 14 707 REM Transcription Factor family AT1G26680 25.452 9.78e-44 167.0
Cobi5g00102 . 11 381 REM Transcription Factor family AT4G31650 24.324 1.56e-18 85.5
Cobi5g00101 . 12 273 REM Transcription Factor family AT4G31640 22.263 8.47e-16 74.7
Cobi6g03956 ACH 1 365 REM Transcription Factor family AT2G24700 26.954 8.17e-33 126.0
Cobi8g02469 . 57 235 REM Transcription Factor family AT4G31640 32.065 6.47e-18 79.7
Cobi8g02468 . 14 227 REM Transcription Factor family AT4G31690 24.444 2.14e-12 63.9
Cobi1g02126 ACH,WGDA 22 302 REM Transcription Factor family AT4G33280 23.841 2.64e-14 72.0
Cobih2tg0157l_1g00010 . 263 826 REM Transcription Factor family AT1G26680 25.884 1.38e-37 146.0
Cobih2tg0157l_1g00015 . 140 817 REM Transcription Factor family AT1G26680 24.731 2.66e-33 134.0
Cobih2tg0157l_1g00019 . 148 368 REM Transcription Factor family AT2G24700 32.794 3.23e-32 122.0
Cobi1g01254 . 8 342 REM Transcription Factor family AT4G31680 27.324 1.31e-21 93.6
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi B3 1.4e-16 CL0405 TF B3