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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi5g00114 ATGCGAAGATCGAATGCTCGTAAGGCATCACAAGCAGCAGCATCAGATTCATCATCATCAGCATCAGTTGACAGTGGTGAAATAGATAATAATTTGGATAATAACTCAATGAAGGCTAAGTTTAGACCTAATTCATCGCTCCGATCCACTAATCTCTTCTCCAGAAATCAAAAACCGCAGTCTCAGGTTACGAAATCGAATATATTTGTTATCGGATTCGTTACTTTAGCGTTTGTGACGTCATGTTATTTTTACGTGAATTCGCGTAATCCGGTTGATAAACGATATCGTATTGTCATTGATGGAGGGAGTACAGGGAGTCGGATTCATGTGTTTGAGTATTATGTTACGGATGGAGGTCCCGTGTTTGATTTTAGTGGTGAGAGTGGGTTAGGTTCAATGCGAGTTAGCCCTGGGTTATCGGCGTTTGTGGAGGATCCGGATAGGGCGGGTGAGTCGGTGGTGGAGCTTTTGGAGTTTGCTAGGAAGAAGATTTTGAAGGAGGATTGGGGGAAAACGGAGGTTAGGTTAATGGCGACTGCTGGGTTGAGGATGTTGGAATTGAGTGTACAAGAGAGGATTTTAGAGGCTTGTAGGAAGGTTTTGAGGAGTTCTGGCTTTGTTTTTCATGATGATTGGGCTTCAGTTATCTCAGGGTCTGACGAGGGAGTACATGCATGGGTTGTGGCTAATTATGCTCTCGGGACTCTTGGAGGTGATCCTCATGAAACAACAGGGATAATTGAACTTGGTGGTGCTTCTGCTCAGGTAACCTTTTTCTCGAGTGAGCCAATACCTCCTGAATTTTTAAGGACGGTTAAGTTTGGAAATGTCAGTTATAGTCTTTACAGCCACAGCTTGCTCGAGTATGGTCAGAATGTTGCATTTGACTTGGTTCGTCGGTCAAACTTGGCAAAAGCTCCAAATCCAGAATCATTTAGCAGCAAAATACTTCTGGATCCATGCTCGCCAAAAGGATACAAACACAACTTAATAACAGGAAATACAACTCCTAATTCTTTAATAACAAATGATGAGCAAAAATCAATTCTACATGCAAGTGGCAACTTCTCAGAATGCAGAACTGCTTCCTTAACATTGTTGCAGAAAGGCAAAGAGGGGTGTGCCTATAACCAATGCTACATCGGGTCAACATTCATACCCAAATTACAAGGAAAATTTTTGGCAACCGAGAATTTCTTTCATACATCTAAGTTCTTTGGATTATCACCAAAAACTTTTCTTTCTGAGCTCATGGTGGCTGGAAAACAATTCTGTGAAGAAGATTGGTCAAAGTTAAAGTCAAAGTATCCAAAACTTAACGATGACGATTTGCATCGTTACTGTTTCTCTTCAGCATACATTATTGCTTTACTTCATGACAGCCTCGGAATTGCTTTTGATGATAAAAGGATCTTATATGCTAATCAAGTGAATAATATTCCACTCGATTGGGCGTTAGGAGCCTTCATCTTTCAGGTGAGGGAAAGCCTAAAAAAGAGAGGGGAGATGGCAGGCCCCACTGAGTCAACTCGCGCAGTTGATGAAAACGGGCCCACAGACGATGATGAGGAAGCACCTTTACTAAACGCAGCAGAGTGTCGTATTTGCCAAGAGGGAGATTCAGTTGATACTTTAGAGATACCATGTTCCTGCAATGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAACATTGGTGCAATGAAAAGGGCGACGTCACTTGTGAAATATGCCACCAACCTTACCAGCCTGGCTATATCGTCCCACCTCCCAGGTCACGTTTGGAAGAGACTACGATAGATATCGGGGGAGGATGGCAAATATCGGGAACACCTATGGATTTAAACGACCCACGTCTCTTGGCAATTGCTGAAGCCGAACGTCAGTTTCTTGAAGCTGAATATGAAGATTATAATGCATCAAACGCCAGTGGAGCTGCGTTTTGTCGTTCAGCTGTTTTAATTCTAATGGCACTCCTGCTGCTAAGGCATGCAGTAACTGTGCCAGAATCTGAAGGAGATGAAGATGCATCTACTTTCTTGACTCTTTTCTTGCTTCGGGTTGCTGGATTTCTTCTTCCGTGCTACATTATGGCCTGGGCCATCAGCATCTTGCAGCGTCGAAGGCAAAGACAGGAGGCTGCGGCATCACAAATTGCTTTTGTATTGCAAGCGGGCCAAAGGCGGGGCCTACACTTTGCAATAGCCTCTGCAGGGCCACCAGCAGCTGCCGTGGTGGCCCCACATGAGGACATTGTTTGA 2265 43.8 MRRSNARKASQAAASDSSSSASVDSGEIDNNLDNNSMKAKFRPNSSLRSTNLFSRNQKPQSQVTKSNIFVIGFVTLAFVTSCYFYVNSRNPVDKRYRIVIDGGSTGSRIHVFEYYVTDGGPVFDFSGESGLGSMRVSPGLSAFVEDPDRAGESVVELLEFARKKILKEDWGKTEVRLMATAGLRMLELSVQERILEACRKVLRSSGFVFHDDWASVISGSDEGVHAWVVANYALGTLGGDPHETTGIIELGGASAQVTFFSSEPIPPEFLRTVKFGNVSYSLYSHSLLEYGQNVAFDLVRRSNLAKAPNPESFSSKILLDPCSPKGYKHNLITGNTTPNSLITNDEQKSILHASGNFSECRTASLTLLQKGKEGCAYNQCYIGSTFIPKLQGKFLATENFFHTSKFFGLSPKTFLSELMVAGKQFCEEDWSKLKSKYPKLNDDDLHRYCFSSAYIIALLHDSLGIAFDDKRILYANQVNNIPLDWALGAFIFQVRESLKKRGEMAGPTESTRAVDENGPTDDDEEAPLLNAAECRICQEGDSVDTLEIPCSCNGSLKYAHRKCVQHWCNEKGDVTCEICHQPYQPGYIVPPPRSRLEETTIDIGGGWQISGTPMDLNDPRLLAIAEAERQFLEAEYEDYNASNASGAAFCRSAVLILMALLLLRHAVTVPESEGDEDASTFLTLFLLRVAGFLLPCYIMAWAISILQRRRQRQEAAASQIAFVLQAGQRRGLHFAIASAGPPAAAVVAPHEDIV 754
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi5g00114 754 Pfam GDA1-CD39 (nucleoside phosphatase) family 92 497 IPR000407 GO:0016787(InterPro)
Cobi5g00114 754 SMART ringv-2 533 580 IPR011016 GO:0008270(InterPro)
Cobi5g00114 754 CDD NBD-sugar-kinase-HSP70-actin 98 260 - -
Cobi5g00114 754 MobiDBLite consensus disorder prediction 1 43 - -
Cobi5g00114 754 MobiDBLite consensus disorder prediction 8 43 - -
Cobi5g00114 754 SUPERFAMILY RING-U-box 532 584 - -
Cobi5g00114 754 MobiDBLite consensus disorder prediction 502 525 - -
Cobi5g00114 754 CDD RING-CH-C4HC3-MARCH 534 580 - -
Cobi5g00114 754 Gene3D Exopolyphosphatase. Domain 2 218 479 - -
Cobi5g00114 754 ProSiteProfiles Zinc finger RING-CH-type profile. 526 586 IPR011016 GO:0008270(InterPro)
Cobi5g00114 754 PANTHER ADENOSINE-GUANOSINE DIPHOSPHATASE 70 504 IPR000407 GO:0016787(InterPro)
Cobi5g00114 754 Gene3D - 95 491 - -
Cobi5g00114 754 Coils Coil 622 642 - -
Cobi5g00114 754 Pfam RING-variant domain 534 579 IPR011016 GO:0008270(InterPro)
Cobi5g00114 754 Pfam Protein of unknown function (DUF3675) 585 703 IPR022143 -
Cobi5g00114 754 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 520 587 IPR013083 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi5g00114 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
72211 Cobi5g00114 Cobi7g02506
72212 Cobi5g00114 Cobi8g01416
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr1:76741993 Cobi5g00114 Cobi-Chr5:1928078 dispersed
Cobi Cobi-Chr4:5854412 Cobi5g00114 Cobi-Chr5:1928078 dispersed
Cobi Cobi-Chr5:1928078 Cobi7g02461 Cobi-Chr7:26436775 dispersed
Cobi Cobi-Chr5:79122949 Cobi5g00114 Cobi-Chr5:1928078 transposed
Cobi Cobi-Chr2:81224428 Cobi5g00114 Cobi-Chr5:1928078 wgd
Cobi Cobi-Chr5:1928078 Cobi5g02845 Cobi-Chr5:79113485 wgd
Cobi Cobi-Chr5:1928078 Cobi8g01416 Cobi-Chr8:64441647 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi3g00536 . 40 569 Nodulin-like gene family AT1G31470 49.189 5.08e-164 477.0
Cobi1g03451 . 3 336 Nodulin-like gene family AT5G64700 57.784 3.45e-122 354.0
Cobi1g04044 ACH,WGDA 7 454 Nodulin-like gene family AT1G80530 59.202 0.0 540.0
Cobi1g04158 ACH 4 579 Nodulin-like gene family AT5G14120 61.806 0.0 716.0
Cobi1g04301 ACH,WGDA 5 524 Nodulin-like gene family AT1G74780 58.733 0.0 576.0
Cobi1g04451 . 5 389 Nodulin-like gene family AT1G75500 67.532 0.0 520.0
Cobi2g02796 . 15 389 Nodulin-like gene family AT1G75500 73.867 0.0 571.0
Cobi1g00628 WGDA 7 328 Nodulin-like gene family AT1G44800 30.462 3.39e-33 123.0
Cobi1g00629 WGDA 7 328 Nodulin-like gene family AT1G44800 30.462 1.70e-33 124.0
Cobi11g02275 WGDA 3 565 Nodulin-like gene family AT2G39210 66.491 0.0 769.0
Cobi6g02070 ACH,WGDA 5 530 Nodulin-like gene family AT1G74780 58.824 0.0 583.0
Cobi6g02069 ACH,WGDA 9 473 Nodulin-like gene family AT1G18940 47.966 2.71e-118 373.0
Cobi6g02023 . 111 561 Nodulin-like gene family AT4G19180 35.368 1.12e-91 295.0
Cobi6g01882 ACH,WGDA 5 561 Nodulin-like gene family AT1G80530 59.715 0.0 682.0
Cobi6g01294 . 3 402 Nodulin-like gene family AT5G07050 63.054 1.75e-174 491.0
Cobi10g00195 . 9 345 Nodulin-like gene family AT3G30340 47.839 3.64e-114 335.0
Cobi10g00766 WGDA 16 343 Nodulin-like gene family AT5G45370 64.205 6.25e-163 459.0
Cobi5g01171 . 5 362 Nodulin-like gene family AT1G44800 55.372 6.19e-147 419.0
Cobi5g01280 . 16 562 Nodulin-like gene family AT4G34950 68.058 0.0 772.0
Cobi2g00234 . 16 355 Nodulin-like gene family AT5G40240 32.951 1.12e-60 196.0
Cobi2g00026 . 8 566 Nodulin-like gene family AT2G39210 69.41 0.0 807.0
Cobi10g02329 WGDA 6 496 Nodulin-like gene family AT2G30300 48.462 1.26e-153 446.0
Cobi10g01590 . 1 739 Nodulin-like gene family AT4G19180 59.109 0.0 862.0
Cobi10g01429 . 4 356 Nodulin-like gene family AT1G09380 49.575 5.80e-118 343.0
Cobi12g01302 . 4 356 Nodulin-like gene family AT1G09380 50.142 1.68e-118 345.0
Cobi12g00544 . 51 371 Nodulin-like gene family AT2G39510 56.135 3.24e-128 369.0
Cobi12g00014 . 9 372 Nodulin-like gene family AT1G70260 43.288 2.72e-103 306.0
Cobi6g00085 . 3 402 Nodulin-like gene family AT5G07050 63.3 4.09e-173 488.0
Cobi6g00509 . 1 336 Nodulin-like gene family AT2G37460 64.516 1.41e-162 459.0
Cobi6g00638 ACH 5 556 Nodulin-like gene family AT2G28120 65.412 0.0 753.0
Cobi1g01483 ACH 6 198 Nodulin-like gene family AT3G43660 64.39 4.33e-92 266.0
Cobi1g01465 . 1 327 Nodulin-like gene family AT1G25270 43.119 1.05e-97 296.0
Cobi1g01464 . 218 355 Nodulin-like gene family AT1G68170 44.928 1.29e-36 127.0
Cobi1g01460 . 1 343 Nodulin-like gene family AT1G25270 36.182 7.37e-74 232.0
Cobi10g02644 . 1 375 Nodulin-like gene family AT2G37460 59.151 8.80e-164 462.0
Cobi10g02642 . 11 380 Nodulin-like gene family AT2G37460 62.735 8.44e-170 477.0
Cobi2g00983 . 4 361 Nodulin-like gene family AT2G39510 52.909 1.03e-130 378.0
Cobi2g00982 . 7 360 Nodulin-like gene family AT2G39510 53.631 9.14e-141 403.0
Cobi2g00981 . 7 342 Nodulin-like gene family AT2G39510 58.16 1.08e-143 410.0
Cobi2g00979 . 7 327 Nodulin-like gene family AT2G39510 55.901 5.81e-133 383.0
Cobi2g00978 . 7 338 Nodulin-like gene family AT2G39510 53.892 2.78e-128 372.0
Cobi2g00975 . 1 371 Nodulin-like gene family AT2G39510 55.118 2.81e-145 424.0
Cobi2g00974 . 21 342 Nodulin-like gene family AT2G39510 53.704 2.27e-115 337.0
Cobi2g00877 . 9 348 Nodulin-like gene family AT1G70260 46.221 1.30e-106 315.0
Cobi2g00876 . 1 372 Nodulin-like gene family AT1G70260 44.267 1.74e-104 310.0
Cobi2g00875 . 7 366 Nodulin-like gene family AT3G28050 38.95 7.30e-71 223.0
Cobi3g03046 . 13 198 Nodulin-like gene family AT3G43660 65.464 5.17e-87 260.0
Cobi3g03045 . 4 193 Nodulin-like gene family AT3G43660 63.731 2.28e-85 249.0
Cobi3g02789 . 1 353 Nodulin-like gene family AT5G64700 45.787 1.38e-94 284.0
Cobi3g02646 . 5 561 Nodulin-like gene family AT1G80530 59.537 0.0 673.0
Cobi3g02207 . 10 355 Nodulin-like gene family AT5G40240 43.103 4.07e-92 278.0
Cobi3g01926 . 11 195 Nodulin-like gene family AT3G43660 48.276 6.68e-59 182.0
Cobi3g01925 . 11 195 Nodulin-like gene family AT3G43660 47.783 4.75e-57 178.0
Cobi5g00290 . 2 193 Nodulin-like gene family AT3G43660 23.673 5.80e-08 49.7
Cobi5g00114 ACH 123 566 Nodulin-like gene family AT4G19180 28.07 1.03e-40 158.0
Cobih2tg0040l_1g00068 . 9 345 Nodulin-like gene family AT3G30340 48.127 9.74e-115 336.0
Cobi8g02665 ACH 6 578 Nodulin-like gene family AT5G14120 71.477 0.0 847.0
Cobi8g02600 . 11 342 Nodulin-like gene family AT5G40240 38.323 3.29e-73 230.0
Cobi8g02599 . 255 358 Nodulin-like gene family AT3G28050 45.299 2.33e-25 99.4
Cobi8g02598 . 227 365 Nodulin-like gene family AT3G28050 38.129 2.84e-24 94.7
Cobi8g02597 . 11 352 Nodulin-like gene family AT5G40240 32.164 1.13e-56 185.0
Cobi8g02595 . 39 355 Nodulin-like gene family AT5G40240 41.231 1.00e-67 224.0
Cobi8g02594 . 43 367 Nodulin-like gene family AT3G28050 56.587 5.18e-120 348.0
Cobi8g02593 . 221 366 Nodulin-like gene family AT3G28050 48.485 2.11e-42 146.0
Cobi8g02592 . 9 366 Nodulin-like gene family AT3G28050 60.165 1.08e-143 410.0
Cobi8g02591 . 3 367 Nodulin-like gene family AT3G28050 63.686 3.41e-158 447.0
Cobi8g02506 . 248 360 Nodulin-like gene family AT3G28050 43.363 5.41e-22 86.3
Cobi9g00217 . 5 402 Nodulin-like gene family AT5G07050 65.196 0.0 511.0
Cobi1g01765 . 12 364 Nodulin-like gene family AT5G40240 44.101 1.86e-97 291.0
Cobi1g01766 . 16 341 Nodulin-like gene family AT5G40240 43.731 2.99e-90 274.0
Cobi9g03028 ACH 9 560 Nodulin-like gene family AT2G28120 69.3 0.0 792.0
Cobi9g02648 . 7 338 Nodulin-like gene family AT2G39510 53.293 2.98e-128 371.0
Cobi2g03433 . 8 371 Nodulin-like gene family AT2G37460 60.929 6.52e-167 473.0
Cobi2g03683 . 1 356 Nodulin-like gene family AT5G64700 45.787 6.45e-95 285.0
Cobi7g02562 . 1 362 Nodulin-like gene family AT4G30420 40.22 2.17e-88 267.0
Cobi7g02425 . 21 270 Nodulin-like gene family AT5G40240 40.239 9.41e-45 158.0
Cobi7g02422 . 17 363 Nodulin-like gene family AT5G40230 41.379 4.54e-79 252.0
Cobi7g01785 . 1 362 Nodulin-like gene family AT4G30420 46.556 6.07e-117 342.0
Cobi7g01784 . 1 360 Nodulin-like gene family AT4G30420 48.476 8.51e-122 355.0
Cobi7g01388 WGDA 5 198 Nodulin-like gene family AT3G43660 67.526 5.94e-91 263.0
Cobi7g00486 ACH 17 171 Nodulin-like gene family AT3G43660 74.839 1.84e-82 240.0
Cobi7g00485 ACH 2 198 Nodulin-like gene family AT3G43660 66.502 5.00e-95 274.0
Cobi7g00484 ACH 17 198 Nodulin-like gene family AT3G43660 71.429 2.15e-95 274.0
Cobi7g00483 . 3 198 Nodulin-like gene family AT3G43660 66.346 9.50e-96 275.0
Cobi8g02022 WGDA 5 342 Nodulin-like gene family AT5G45370 61.878 1.74e-162 458.0
Cobi8g02227 . 11 356 Nodulin-like gene family AT3G30340 47.339 6.06e-113 335.0
Cobi1g02284 ACH 47 579 Nodulin-like gene family AT5G14120 59.065 0.0 634.0
Cobi1g01970 WGDA 12 198 Nodulin-like gene family AT3G43660 64.921 2.16e-87 254.0
Cobi10g01009 . 17 363 Nodulin-like gene family AT5G40230 50.0 4.16e-110 324.0
Cobi5g02673 . 2 193 Nodulin-like gene family AT3G43660 24.082 4.22e-08 50.1
Cobi5g01970 . 5 366 Nodulin-like gene family AT2G37460 49.728 6.87e-126 365.0
Cobi5g01969 . 209 296 Nodulin-like gene family AT2G37450 38.202 6.40e-10 52.0
Cobi5g01722 . 16 560 Nodulin-like gene family AT4G34950 66.484 0.0 733.0
Cobi2g03842 ACH,WGDA 7 561 Nodulin-like gene family AT1G80530 55.914 0.0 600.0
Cobi4g00337 . 4 568 Nodulin-like gene family AT4G19450 47.841 1.26e-155 455.0
Cobih2tg0281l_1g00001 . 1 327 Nodulin-like gene family AT1G25270 43.119 3.16e-97 295.0
Cobi2g01142 . 1 734 Nodulin-like gene family AT4G19180 56.684 0.0 760.0
Cobih2tg0366l_1g00007 . 52 734 Nodulin-like gene family AT4G19180 59.249 0.0 767.0
Cobih2tg0722l_1g00017 . 5 561 Nodulin-like gene family AT1G80530 59.715 0.0 682.0
Cobi4g02422 ACH 2 198 Nodulin-like gene family AT3G43660 70.297 1.61e-99 285.0
Cobi4g02421 ACH 4 198 Nodulin-like gene family AT3G43660 65.0 7.45e-92 266.0
Cobi4g02420 ACH 2 198 Nodulin-like gene family AT3G43660 69.307 4.55e-98 281.0
Cobi4g02078 . 97 356 Nodulin-like gene family AT1G09380 43.893 7.39e-69 216.0
Cobi6g03214 . 1 566 Nodulin-like gene family AT4G19450 60.348 0.0 647.0
Cobi6g03171 . 8 74 Nodulin-like gene family AT5G45370 60.294 2.06e-24 92.8
Cobi6g03170 . 2 367 Nodulin-like gene family AT3G45870 69.755 8.58e-167 469.0
Cobi8g00561 . 196 676 Nodulin-like gene family AT4G19180 63.223 0.0 602.0
Cobi8g00647 WGDA 7 565 Nodulin-like gene family AT2G39210 66.014 0.0 748.0
Cobi8g01482 . 22 366 Nodulin-like gene family AT5G40230 40.169 9.81e-80 246.0