AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi5g02833 ATGAAGGAGCAGATGGAGAAATCGGACGGTCTGGATATCGTTTCAATCGGAAAGCTGTACGACGGTCCGTGGGAGAAGAAGTATTGGAGTTCGTCTAGGGGTAAAGACAGGCATCCATATCCAGTTGGATATGTAGCTCATCGGGCGAATAACGGGAATACCTACAAGATGGCAATTCTTGAGGGACTTAAAGGACCTGAATTTGTGATTAGTTCCACGGATGGGCAATCTTGTTCTGGTCAAACTCCAGATATTGCATGGGAGGGCTTTCAAAAGAAGAGCAGTGTGCGAATAAAATTTTGGCGTGGAAAGAGATTTTCATGCAAGATAGATGGCGCAGAGCTTTTTGGGTTCAAAAATCCCCAAGTAATGAGGTTACTGCGGGGATTGAAAGCAAATGTCAGCGAAATTTCACAGAACAGTTCGCCATCTTTAGCCGTTGGCAAAGGACAGTCTGAAGGAGCAGATGAACACCATACTAAATATCCTGATTTGCAAGTGAATTCAGTTAAAGTCAAGGGTAAAGAGAAAAGAAGTAATAAACGTAAAGAAATTCATGTGAAATCAGTTAGTGGGCCCGGACGCAAAAGAGAGAGACCTCAAGATCTGATACAAAGTGGTCAAGAACCACATACCAGGCAGAGTTTTGAAGGGGGGCATAACAATGGGGTTCTTTCAAGTTCGTCAAATTGGAACGAAAGTAATACATCTCATTTATTACCAACAGAAGACGGGATTCAGGTTGATTTAGTTATTTCGTCTGATCATCTTGAAAAAGAGAAACATTGTTCTGTTCAAGAAGCAATCACTGAAGAAGGTGCAAAGTTGTCAAAAAGCCAGGAAAATCATGACTTGTCGAAGTTTAACCGCGCACCAGGGTTCACTTCCTCAAAAGATGAAAAGGAAGACCCGCCACTTCAAAAAGAATCACAGATGTTGGATGATATGAACCTCTATGCACCCGATACTTTGGATCTAACCTTAGACAGTTTATGCAATTTGGAGGTGGAGATTCCCAAAGAAAGTACCTGCACATTAAATGAAAAGTTAAATTTTTCTCAAATTTTAGTTTCTGAACAATGTATAACCGACTCCCAGTCAAAAGACGAGACAGGTATTGCTACTGGAGGTGATCTTTATGACAAGAGTGACTCAGATCCAGCTGGACAAGATATATCCAACTCAATGATGGCATTATTACTTCCAAGAGCTCTTCCTCTGCTTAAGACTTTTTCAAGAAAGAAAAAGAAAAATACTAATGGAGTGTCCCAGAAGGAAAGAAAGGAGGTTGACCAATTTCTTAAAGATGAACCTCCAGCCAAATCTTCTGAGCATTTGGAAAATCTCAGTGGTGAAGTTAACATTCCAGACAAACCTTCTACTGAAAACTTTAAATTTGAGAAGCAGGATGAAAGTGTTCTATTTACGAGTACAAATATGGATTCAGTTGTACCTGGTTTAGAAGACTCAACAACGGTTGCGCCTGATAGTTTTGAGGACGATCAGTGTGAAGTTATGGATGCTGTTAAAGATGATCAAAGTACATCCACTATAGATTCATGCACCCGTGAAGTGCTTCATGAACTAGAAGCTAGTGTTGACAATATGTCTTCTATGCTAACTGTTGACCAAAAGGTAGATGGTTTGACTTCAGTTTTGCAGGGTCAAAGAATAAGTCAACACCACAAGACTAACATGGTGCACAATATTGAGGAACCTAATGTGGCGCCTAATGATGAGATAGATAATATCTTTGAACTTGTAGGGTGTTATATGCTTCCAACACCAATTTCAATGGTAATGTTAAGAACAAAAGGGGATGAGGTAGTTGTATGTGTTTTATGTGGCTATCTGATGGAAAACAAAAGGGCATTGTTTATTTACAAGACATCAATTAAAGGAGAAACCAAAGGATGCCCTTCTTTTATTGGTCACACAACAATCATCTCACCAACTTCAATGAACGCATCGGGTAAACAAGTTATTTTGGATAGTTCTAGGTTACAGTTTACTCCAGATGGAAAATCCATTGTTTTACTGAACAGCATTAAAGCTCCTTATTGCAGGGAGGGCAATGTGAACTGTGGGTGTTCATTGTGCACATCAGATTGCTTAGAGAAGAATGCGGTTAAAATTGTGCAAGTAAAACTTGGTTATGTTCAAGTGCTATGCAAACTGAAAACAACTGACAACGTGTGCTCCGTATTAGTTTGTGAGCCTAATTATCTTGTTGCTTCTGAAGAGAGTGGAAAAATGAACTTATGGACCATGAACTCATCTTGGAGTGCACCAACAGACGAGAGCTTTTTGTCAACATATGATTGCATGCCTAATTGTATAATTGAGATGAAAAGAATACCAAAATCTCCATCTTTTATTGTCGGTCACAGTGCATTTGGAGATTTTTGCTTGTGGGATTTAACAAGAAGAACACTTATATCCAAATTTTCAGCTCCAACAACTTCATTTCTTCCCTTCATTCCAATCTGTTTATACAGGCATCCTAGTCAACTTTTATCCACCTCAGATGCTTGTAGAAAGAAACAAGTGGAAGACATCATGGAAGAAACAAACAACCCTGATTTTCTTCCAGTAAACGACGAACAGATGTCACTTGTTCTTCTTGTCTCATCTGCCTCAAATCATGATCCTTATGATGAATATTCGTGTAAAGATACGGGGTTCGGTCCAGCTGGATCGTGGAGCCTTGCATTGTTGGCCAAAAGTAAACTGGTTACAGAAAAGCCTTTGGATCCAAGTGCCACGGTAGTTGGTGCATCATCGGGTTATGGAATCATTGGTACATGTGACGGTTCTCTTTACATTTGGGAATTATCGACCGGTACCAAGGTCGGTTATCTCAGACATTGCAAAGGAGCCACGGTGTCATGTTTGGCAGCTGATGACTCAGACTTCGGCGTGTTTGCAGTGGCTGTTGATGGCAACCAGCTGCAGGTATATGCTTCTAGAACATTGACCGATAGAAAAACGTAA 2994 40.21 MKEQMEKSDGLDIVSIGKLYDGPWEKKYWSSSRGKDRHPYPVGYVAHRANNGNTYKMAILEGLKGPEFVISSTDGQSCSGQTPDIAWEGFQKKSSVRIKFWRGKRFSCKIDGAELFGFKNPQVMRLLRGLKANVSEISQNSSPSLAVGKGQSEGADEHHTKYPDLQVNSVKVKGKEKRSNKRKEIHVKSVSGPGRKRERPQDLIQSGQEPHTRQSFEGGHNNGVLSSSSNWNESNTSHLLPTEDGIQVDLVISSDHLEKEKHCSVQEAITEEGAKLSKSQENHDLSKFNRAPGFTSSKDEKEDPPLQKESQMLDDMNLYAPDTLDLTLDSLCNLEVEIPKESTCTLNEKLNFSQILVSEQCITDSQSKDETGIATGGDLYDKSDSDPAGQDISNSMMALLLPRALPLLKTFSRKKKKNTNGVSQKERKEVDQFLKDEPPAKSSEHLENLSGEVNIPDKPSTENFKFEKQDESVLFTSTNMDSVVPGLEDSTTVAPDSFEDDQCEVMDAVKDDQSTSTIDSCTREVLHELEASVDNMSSMLTVDQKVDGLTSVLQGQRISQHHKTNMVHNIEEPNVAPNDEIDNIFELVGCYMLPTPISMVMLRTKGDEVVVCVLCGYLMENKRALFIYKTSIKGETKGCPSFIGHTTIISPTSMNASGKQVILDSSRLQFTPDGKSIVLLNSIKAPYCREGNVNCGCSLCTSDCLEKNAVKIVQVKLGYVQVLCKLKTTDNVCSVLVCEPNYLVASEESGKMNLWTMNSSWSAPTDESFLSTYDCMPNCIIEMKRIPKSPSFIVGHSAFGDFCLWDLTRRTLISKFSAPTTSFLPFIPICLYRHPSQLLSTSDACRKKQVEDIMEETNNPDFLPVNDEQMSLVLLVSSASNHDPYDEYSCKDTGFGPAGSWSLALLAKSKLVTEKPLDPSATVVGASSGYGIIGTCDGSLYIWELSTGTKVGYLRHCKGATVSCLAADDSDFGVFAVAVDGNQLQVYASRTLTDRKT 997
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi5g02833 997 Gene3D - 7 134 - -
Cobi5g02833 997 MobiDBLite consensus disorder prediction 366 388 - -
Cobi5g02833 997 SUPERFAMILY WD40 repeat-like 669 987 IPR036322 GO:0005515(InterPro)
Cobi5g02833 997 Pfam F-Y rich C-terminus 65 131 IPR003889 GO:0005634(InterPro)
Cobi5g02833 997 MobiDBLite consensus disorder prediction 275 307 - -
Cobi5g02833 997 MobiDBLite consensus disorder prediction 415 460 - -
Cobi5g02833 997 ProSiteProfiles FYR domain FYRC motif profile. 63 143 IPR003889 GO:0005634(InterPro)
Cobi5g02833 997 MobiDBLite consensus disorder prediction 138 240 - -
Cobi5g02833 997 MobiDBLite consensus disorder prediction 152 174 - -
Cobi5g02833 997 MobiDBLite consensus disorder prediction 422 443 - -
Cobi5g02833 997 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 512 971 IPR040092 GO:0005634(PANTHER)|GO:0051726(PANTHER)
Cobi5g02833 997 MobiDBLite consensus disorder prediction 205 240 - -
Cobi5g02833 997 Gene3D - 681 996 IPR015943 GO:0005515(InterPro)
Cobi5g02833 997 ProSiteProfiles FYR domain FYRN motif profile. 3 62 IPR003888 GO:0005634(InterPro)
Cobi5g02833 997 MobiDBLite consensus disorder prediction 183 204 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi5g02833 - -