AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi5g02836 ATGTGCGGAATCGCCTTAATCATCTCCGGTGTTCGTATCGATCTATCGTCTCTGTTTCCAGATTCAACCGATTATTCACACACTTCTCATCATTCTCGCACTGTTTTATTTTCCGTAGATGATATCAAAGCAGCTCTGAGGAAAAGGGGCCCTGACAGTTTAGGGAGCAAGTCTGTATGCCTTCATGTTAATGAGGGACAAATTATTCGATCTTCAGTCGAAGATGAAGAACCAATAAAATTATTCAACTTGAAAGATGGTTTTGATTTGAATAATAACAGTTTAGTTGGAAAAGTTTTGTTTTTTGGTGCTACATTGCAATTAAGAGGAACATGTTCAATCATACAACCTTTGTTGGACAAATCTGGGAATATCCTCGTGTATAATGGTGAAGTGTTTGGAGGAATTGAGATCAGTAACGATAGCAATGATGGTGAAGTTCTCATTGAGTCTTTGAGTAAATGTTGCAACTGTATTTCTCATGAACATGATAGCACATGTACTTCTGGGAAATGCTCTGTTCCTGAATATCTTTCAAAAATCAAGGGGCCATGGGCTTTAATCTACTGGCAGGAGAGCTCAAAGACAATATGGTTTGGTAGAGATGCACTTGGAAGGCGAAGCCTTCTTGTTCATTGGCCAAATGTAAAAGACTCCCGACTCATGCTGTCTTCTGTATCACCACCGTACACTATTAATGAAAATTCTGATTCTGGATATGAAAATGGGCCTGGTGAACCAAACTTTTGGGAAGAGCTCCCATGTGGAGTTTACAGCTTGTCCATGAATGCTTCAAAAATGGATGGAAGTTTGGTGTGTGAAGTCAAAAGACATAACTGGTTTGATCCCTTGTTGCAAGAATTGATTAGGTGGGATAGAACTCTTGTGGAGCCCACGCCTGATAATCTAGTTGAAGTTCATAAAACGTATTTTAATGAGCAACGAGGGCATTTGCATCAGGAAGTTCTGGCTGCACTTAAAGAATCTGTGAGACGGCGCACAGTATTTTCAGGAATTCACCTGGGTAAGTCTCCAGTGGCAGTGCTTTTTTCTGGTGGATTAGATTCAATGATACTTGCAGCCTTGCTGGATCAGTGCTTAGATCCTAAATATGAAATTGATCTGTTGAATGTGAGTTTTGATGGTCAGTTAGCTCCTGATAGAATATCTGCCAGAGCAGGCGTGAACGAACTTAGAAAAATTGCCACCTTGAGAAGATGGAATCTGGTAGAGATAGATGCAGAATTGTCAAAATTGACTTTGGAGACACCACATGTCATGTCACTTATCAATCCCTCCAATACATACATGGACCTTAATATTGGAATTGCCTTGTGGTTGGCAGCTGGCGGCGATGGATGGGTCAGCGAGGAAACTGGCAGAAATAATAACAACAGTTCAGAATGCCAGCGTGTTAAGTACAAGTCTGAATCCCGGATTTTATTGGTTGGTTCTGGTGCGGATGAGCAATGTGCTGGTTATGGCCGCCATAGAACTAAATTCAAACAAAGCAGTTGGAGTGGGCTAAATGAAGAAATGAAGTTAGATATGCAGAGAATATGGAAGAGAAACCTTGGTAGAGACGATAGAATCATTGCTGATAATGGCAAAGAGGCTAGATTTCCTTTTCTAGATGAGGATGTAATAAGGCTACTGCTCGATATCCCACTATGGGAAATTGCAGACCTTCGCCAACCAAGTGGAGTTGGAGATAAAAAGATATTGCGTGAGGTTGCAAGAATGCTTCACTTGCAAGAAGCGGCTGTTCTACCTAAACGAGCTATTCAGTTTGGCTCTAGAATTGCTCGGGAATCAAACCGCAAAAATTTTGGAAGTAATCGTGCTGCAAACCAAGCTTCTGCTGGAAGTGCACTCTTTCACCCACTCTGA 1890 41.32 MCGIALIISGVRIDLSSLFPDSTDYSHTSHHSRTVLFSVDDIKAALRKRGPDSLGSKSVCLHVNEGQIIRSSVEDEEPIKLFNLKDGFDLNNNSLVGKVLFFGATLQLRGTCSIIQPLLDKSGNILVYNGEVFGGIEISNDSNDGEVLIESLSKCCNCISHEHDSTCTSGKCSVPEYLSKIKGPWALIYWQESSKTIWFGRDALGRRSLLVHWPNVKDSRLMLSSVSPPYTINENSDSGYENGPGEPNFWEELPCGVYSLSMNASKMDGSLVCEVKRHNWFDPLLQELIRWDRTLVEPTPDNLVEVHKTYFNEQRGHLHQEVLAALKESVRRRTVFSGIHLGKSPVAVLFSGGLDSMILAALLDQCLDPKYEIDLLNVSFDGQLAPDRISARAGVNELRKIATLRRWNLVEIDAELSKLTLETPHVMSLINPSNTYMDLNIGIALWLAAGGDGWVSEETGRNNNNSSECQRVKYKSESRILLVGSGADEQCAGYGRHRTKFKQSSWSGLNEEMKLDMQRIWKRNLGRDDRIIADNGKEARFPFLDEDVIRLLLDIPLWEIADLRQPSGVGDKKILREVARMLHLQEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSALFHPL 629
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi5g02836 629 Gene3D HUPs 309 624 IPR014729 -
Cobi5g02836 629 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 253 IPR017932 -
Cobi5g02836 629 Pfam Asparagine synthase 502 582 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Cobi5g02836 629 Pfam Asparagine synthase 322 394 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Cobi5g02836 629 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 25 237 IPR029055 -
Cobi5g02836 629 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 626 IPR051857 -
Cobi5g02836 629 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 227 IPR029055 -
Cobi5g02836 629 Pfam Glutamine amidotransferase domain 115 225 IPR017932 -
Cobi5g02836 629 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 319 622 - -
Cobi5g02836 629 CDD Asn-Synthase-B-C 324 598 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi5g02836 K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]