AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g00890 ATGAATTCGATTCAAAACAAACAAGAAACTATGCAAACAAACTGTGAGGCCCCGGTATCAAGCCTCCTGAGCAATGGACACCCACAGTATAATGAGAGTCCTATGGAAGGGTTTATAGAACACAAAAATGATACAAACTTTATAGAACTAGACCAGACTGAATTTCTAGAGTCTTCAATCGAACCCAACAAAAAACCAACCTATCTGGGTTCATGGACTTTGCATCCCGACATTAAAAAGGCACAACTTTGCCAGTTGAATAACATTGAAGGCCAGTTTTACCCTTTCTTGGTGAATAGCAGGGTTCAATATGCTCCATTTCCCATGTTCCCTCAATGTTACCCCTATGGTTATCAGCATCAAGAGTTCCATTATTTTGTGGTCATTGATTTTGAGGCTACATGCGATAAGGACAGGAATCCTCATCCCCAGGAGATCATTGAATTCCCTTCGGTTATAGTGAGTAGTTTGACTGGTCAACTAGAAGCTTGTTTTCAAACATATGTTCGTCCAACGTGCAATCAGCTTTTAAGTGATTTTTGCAAGGATTTGACTGGTATTCAGCAAATTCAGGTGGACGAAGGAGTTACTCTTAGTGAAGCCCTTCTAAGACATGACAAATGGCTGGAGAGGAAAGGGATAAAGAATGCCAACTTTGCTGTGGTGACATGGTCAAACTGGGACTGTAGAGTCATGCTGGAATCAGAATGCAGATTCAAGAAAATCCGTAAGCCTCCTTATTTTAACCGATGGATCAACTTAAAAGTTCCATTCTGTGAGGTTTATGGCGGTGCAAAATGCAATCTGAAGGAGGCGGTCCAGATGGCAGGGCTATCGTGGCAGGGTCGACCTCACTGCGGTTTAGATGACGCCAAGAACACCGCCCGTCTACTTGCTCTGATGATGCACAAGGGTTCCAAGTTCTCAATCACCAATTCCTTGATCACTGACCACCATGCTTTCACTTGGAAACCACCACTTGTACACATCCCTTTTCCGCCATACCACCACCTGCCGCCTCACAAACCAAAGGACCTGCATTTTGTTCCAATATTTCATCCTTGCTGTTTCTGTGGGGTGAAAAGCAGTAAAGGGATGGTTCAGAAACCGGGTCCCAAACAAGGCAGCTGCTTCTTTGGGTGTGGGAATTGGACGTATGCTAGAGGTGCTCGTTGCCAGTATTTTGAATGGGCTTGA 1197 44.11 MNSIQNKQETMQTNCEAPVSSLLSNGHPQYNESPMEGFIEHKNDTNFIELDQTEFLESSIEPNKKPTYLGSWTLHPDIKKAQLCQLNNIEGQFYPFLVNSRVQYAPFPMFPQCYPYGYQHQEFHYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSLTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDEGVTLSEALLRHDKWLERKGIKNANFAVVTWSNWDCRVMLESECRFKKIRKPPYFNRWINLKVPFCEVYGGAKCNLKEAVQMAGLSWQGRPHCGLDDAKNTARLLALMMHKGSKFSITNSLITDHHAFTWKPPLVHIPFPPYHHLPPHKPKDLHFVPIFHPCCFCGVKSSKGMVQKPGPKQGSCFFGCGNWTYARGARCQYFEWA 398
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g00890 398 ProSiteProfiles Zinc finger GRF-type profile. 356 398 IPR010666 GO:0008270(InterPro)
Cobi6g00890 398 Pfam Exonuclease 127 298 IPR013520 -
Cobi6g00890 398 FunFam Exonuclease domain-containing protein 1 117 325 - -
Cobi6g00890 398 CDD ERI-1-3'hExo-like 126 302 IPR047201 GO:0000175(InterPro)
Cobi6g00890 398 Gene3D - 117 324 IPR036397 GO:0003676(InterPro)
Cobi6g00890 398 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 119 374 IPR051274 -
Cobi6g00890 398 SMART exoiiiendus 125 307 IPR013520 -
Cobi6g00890 398 SUPERFAMILY Ribonuclease H-like 123 312 IPR012337 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g00890 K18417 ERI1 exoribonuclease 2 [EC:3.1.-.-]