Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cobi6g00894	ATGCAAAGAGTTAGGGTTTCATCACAGCAAGTAGCAGTACAAAAGTTAGGGGATTCACAGATGACATTATCTCCAAAGTTCAAGTTAGCTGCAGTTCAATCGCGTTTACTGGATCCGTTTGTTGAAACCGAGTTAAGTCTTAGAGGTGATCCACTTATTCCCGGTCTTCCTGATGATATTGCTTTAAATTGTCTTCTAAGATTGCCAGTTTCTAGTCACACGGCTTCAAAAACCGTTTGCAAACGTTGGTATCAACTATTTGGTAACAAAGAACGGTTCTTTACACGAAGAAAAGAAATGGGATTTCAAGATCCTTGGTTATTTATATTCTCCTTTCATAAATGTACAAGAAAGATTCAATGGCATGTTCTTGATCTTATTAATTTCTCATGGCACACGATTCCACAAATGCCTTGTATCGATAAGGTGTGTCCACACGGGTTTAGGTGCGTTTCATTCCCGTTTGAGGGGTCACTTTTCGTTTGTGGAGGTGTGGTTTTTGACGGCGATTGCCCTTTGAATTTAGTGTTGAAGTTTAATGTTCAAAAGAATTGTTGGACTGTGATGAAGAAGATGATAACCGCAAGGTCGTTTTTCGCGAGTGGGGTCATAAACGGAAAGATTTATGTGGCTGGTGGAAACAGTACGGATCTTTTTGAGCTAAATTCTGCTGAGGTTATGGACCCGAATAAGGGGATTTGGCATTCGGTTGCAAATATGGGTACAAATATGGCATCTTATGATGCAGCGGTTCTTGATGGGAAGCTTCTTGTGACCGAGGGGTGGTTTTGGCCCTTTTATGTCGTCCCGAGGGGTCAAATTTATGATCCGAAAACCGATCATTGGGAAAACATGGCAGATGGGCTTAGAGAAGGATGGACGGGTTCGAGTGTGGTGATTTATGGTCAGTTGTTTGTGGTGACCGAGCACGAGAGGACTAAACTTAAGGTGTATGATATGAATAATGATTCTTGGAAAGTTGTTGACGGGCCTCCTATACCGGAGCAAATATGCAAGCCTTTTTCGGTTAATTGTAATAATAATAAGATTTATGTTGTGGGGAAAAACCTTCATGTTGCTGTTGGGTGTATTTTGAGGTCGAATAGTGAGAAAAGCCCGAGCTTTTCGGTTCAATGGCAAGTGGTTGAAGCACCCGAGGCGCTTTGTGATCTGGCGCCTTCGAGTACGCAGCCGCACAGAATTCAACCGGAAGCTTCATTTCAAATTGATCCAAGTTCATCAAATTCTGTGGTTCACATACCATCATGTCCTCTGCTGCTCCGGAGATTCCCGATCATAACGAAAGTGAGGTCGGTCAAACCCAAAAGGATGGTCAAAGTCAGACCTCACCTTCTGCAACTGCAACTGGCATATCTCATCCTTCAAACGTGCAATACCCAACATTGGTATCTCTTTCCTTTAAAACATAACTTGGGTCAAGCTACTTATCCTTATCCAGATCCTTATTACAGCTTATCCTTATCCACTCCCTATGAAACACAACCGTATCCAACTCACCCGTATCCGGTCCAACCTATGGTACATCTTCAGTTTATGGGAGTTCAGCAAGGTGGCGTTCCGCTCCCGTCAGACGCAGTTGAGGAGCCGGTTTTTGTGAATGCTAAGCAATATCATGGAATCTTGAGGCGTAGACAGTGCCGTGCAAAAGCTGAATCTGAAAATAAAGCTCATAAGTCTAGAAAGAAGCCGTATTTGCATGAATCGAGGCATTTGCATGCACTGAGAAGAAGCAGAGGGTGTGGTGGTCGGTTTGAGAAAAAAGATAAGCAACAAAAGGATGGGTCTGATGATAATTCTCAGGTGAAAGATATCAATCTCAACTCTGATAAACCCTAG	1857	42.86	MQRVRVSSQQVAVQKLGDSQMTLSPKFKLAAVQSRLLDPFVETELSLRGDPLIPGLPDDIALNCLLRLPVSSHTASKTVCKRWYQLFGNKERFFTRRKEMGFQDPWLFIFSFHKCTRKIQWHVLDLINFSWHTIPQMPCIDKVCPHGFRCVSFPFEGSLFVCGGVVFDGDCPLNLVLKFNVQKNCWTVMKKMITARSFFASGVINGKIYVAGGNSTDLFELNSAEVMDPNKGIWHSVANMGTNMASYDAAVLDGKLLVTEGWFWPFYVVPRGQIYDPKTDHWENMADGLREGWTGSSVVIYGQLFVVTEHERTKLKVYDMNNDSWKVVDGPPIPEQICKPFSVNCNNNKIYVVGKNLHVAVGCILRSNSEKSPSFSVQWQVVEAPEALCDLAPSSTQPHRIQPEASFQIDPSSSNSVVHIPSCPLLLRRFPIITKVRSVKPKRMVKVRPHLLQLQLAYLILQTCNTQHWYLFPLKHNLGQATYPYPDPYYSLSLSTPYETQPYPTHPYPVQPMVHLQFMGVQQGGVPLPSDAVEEPVFVNAKQYHGILRRRQCRAKAESENKAHKSRKKPYLHESRHLHALRRSRGCGGRFEKKDKQQKDGSDDNSQVKDINLNSDKP	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cobi6g00894	618	Pfam	CCAAT-binding transcription factor (CBF-B-NF-YA) subunit B	535	591	IPR001289	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Cobi6g00894	618	Pfam	Kelch motif	195	241	IPR006652	GO:0005515(InterPro)
	Cobi6g00894	618	SMART	cbf3	532	594	IPR001289	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Cobi6g00894	618	Gene3D	-	533	596	-	-
	Cobi6g00894	618	Pfam	F-box domain	54	93	IPR001810	GO:0005515(InterPro)
	Cobi6g00894	618	MobiDBLite	consensus disorder prediction	555	618	-	-
	Cobi6g00894	618	SMART	fbox-2	56	96	IPR001810	GO:0005515(InterPro)
	Cobi6g00894	618	ProSitePatterns	NF-YA-HAP2 subunit signature.	538	558	IPR018362	GO:0003677(InterPro)\|GO:0016602(InterPro)
	Cobi6g00894	618	MobiDBLite	consensus disorder prediction	568	584	-	-
	Cobi6g00894	618	PRINTS	CCAAT-binding transcription factor subunit B signature	568	591	IPR001289	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Cobi6g00894	618	PRINTS	CCAAT-binding transcription factor subunit B signature	536	558	IPR001289	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Cobi6g00894	618	PANTHER	OS02G0202900 PROTEIN	6	395	-	-
	Cobi6g00894	618	SMART	kelc-smart	158	206	IPR006652	GO:0005515(InterPro)
	Cobi6g00894	618	SMART	kelc-smart	207	254	IPR006652	GO:0005515(InterPro)
	Cobi6g00894	618	Gene3D	-	95	381	IPR015915	GO:0005515(InterPro)
	Cobi6g00894	618	ProSiteProfiles	NF-YA-HAP2 family profile.	533	594	IPR001289	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Cobi6g00894	618	MobiDBLite	consensus disorder prediction	585	606	-	-
	Cobi6g00894	618	SUPERFAMILY	F-box domain	51	131	IPR036047	GO:0005515(InterPro)
	Cobi6g00894	618	SUPERFAMILY	Kelch motif	104	356	IPR015915	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cobi6g00894	K08064	nuclear transcription factor Y, alpha

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cobi	Cobi-Chr5:4607939	Cobi6g00894	Cobi-Chr6:7260954	dispersed
	Cobi	Cobi-Chr6:7260954	Cobi9g02961	Cobi-Chr9:72924670	dispersed
	Cobi	Cobi-Chr6:7260954	Cobi5g02522	Cobi-Chr5:72568758	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cobi11g02177	.	32	310	CCAAT-HAP2 Transcription Factor family	AT1G72830	41.275	1.07e-44	153.0
	Cobi12g01053	ACH,WGDA	6	235	CCAAT-HAP2 Transcription Factor family	AT5G06510	42.353	6.22e-48	161.0
	Cobi12g00906	ACH	50	268	CCAAT-HAP2 Transcription Factor family	AT5G12840	45.536	6.49e-54	176.0
	Cobi6g00894	.	36	176	CCAAT-HAP2 Transcription Factor family	AT2G34720	54.902	2.68e-45	157.0
	Cobi3g00021	.	142	231	CCAAT-HAP2 Transcription Factor family	AT3G14020	65.591	2.41e-34	122.0
	Cobi9g02986	ACH	50	269	CCAAT-HAP2 Transcription Factor family	AT5G12840	48.23	4.10e-57	182.0
	Cobi2g03385	WGDA	83	293	CCAAT-HAP2 Transcription Factor family	AT3G05690	45.0	2.34e-49	163.0
	Cobi5g02522	.	1	233	CCAAT-HAP2 Transcription Factor family	AT5G12840	40.254	2.43e-45	151.0
	Cobih2tg0197l_1g00018	.	15	235	CCAAT-HAP2 Transcription Factor family	AT5G06510	40.417	3.40e-44	149.0
	Cobi1g01707	.	31	242	CCAAT-HAP2 Transcription Factor family	AT1G54160	43.243	1.38e-42	146.0
	Cobih2tg0532l_1g00010	.	31	242	CCAAT-HAP2 Transcription Factor family	AT1G54160	43.243	1.38e-42	146.0
	Cobi9g01703	ACH	15	196	CCAAT-HAP2 Transcription Factor family	AT5G06510	46.316	8.95e-45	151.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Cobi	CBFB_NFYA	5.7e-25	No_clan		TF	NF-YA