AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01000 ATGGGATTCAATTCAGTTTTTAGAGTTCTACAGGAGCTTTTTCCACAGGTTGATTCTCGTTTCCTGAAAGCCGTATCTTTAGAATACCCTGATGTTGATTTAGCTGTGGAAGCAGTTCTTGTTGAGACCATGTCGGATATTCGTGAACAACCACTTACAATGGGTTCTTCAAGTAATAGCCGGAGTTCACTTGGTTTCTCTAATGATAATGGCAAAGCTGGTAAAGTTAAGTCGACAAAGGATCATGTAGTTGTTAATTCGTTTATTTCTGAACGTTCAACTGAAGATCATGCTTCAAGTGTCGATGGAAGTTCACTTGGTGTAACGGAAGCTATAGATGCTGAAAATAGTGAAAATAAAGCTAACTGTTATTATGTACATCCACCTTTGGAGACATTTGGAGAGACTAATAATATTAATGCTGATACCGCGTCACCAGTTGTAATCCGTGAAAATGCTTCTCTTGATGACCATGATCAAGTACATGTTGATGAAAATACGTTAGTTGCTTCAGAAAGCAACCGATTTGTAGACATTTCTGAAACAAATTTAGCTGCAGAAGACATTGAAAAAGATGGTTCGGTAACCAACTCTGTTAATTCCGAAGATGAGTTGGTTTTGAGTTCCGTGCTTACTAGATCAGAGCAAATTTGTAGCACCGAATATCTTGATGAAGTTATTGAAGATGCTAAAAATAACAAGAAAATGCTTGCGTCGGCTATGAACTCAGTTATTGATTTAATGAAAGTAGTAGAGTCTAAGGAAAAAGCAGCTGAACAAGCAGACGAGGATGCCACACGGGGTTGTTCTGATATTCTTGCCAAGGTGGACGAGGTTAAACACGCACTTCTAAGGGCAAAAGAGGCAAATGATATGCACGCTGGAGAAGTAAATGCTGAGAAGGCGATTTTAGCTACTGAGTTGAAAGAGCTTCAGCTTCGCTTGTTTAATTTGTCAGACGAAAGAAACAAAGCGCTTGCAATTCTTGAGGAGATGCATAGAGCGTTAGAGATTAGAATGGCTGCCGCGTTAGAAGAAATTGCATCGGCAGAGCAGAAAAAGTTAGAACGAGAACGGTCTGCTAGAGAAGCACTTTTGTACCAAGAAAGCCAAATGGAGAAAGTGGTTGAAGAGTCTAAGAAACTGAAGCTAGAAGCCTTGGAAAATTCTAAGTTACAAGAGTTTCTCATGGACCGTGGCCATACGATTGATATCCTACAAGGAGAGATTGCGGTCAAATGTCAGGATGTGCTACTGCTAAAAGAGAAGTTTGACAAACGAATCCCGCTATCACAAATACTTTCTTCTAGCCAAACTTCATCAATCTTTGCCTCTTCAAGTTCATCTTTTGTAAGCACCGCAACACCTCTCGAGGCAGAGGCTGAGAACTACGAGACACCAAAAAAGAATTTGGAACAATATGATTCTTATGGAATTTTTGACAATAATGGTAACGAAGAAACGACGAATTCTCCTAGTGGTAAAGAAAAAAAGGTTGTTAGTGAACTTAAGGGGGTTTTGGATGATGATGAATGGGAGCTATTTGATAATGGCTGCTGTAGATGA 1566 39.59 MGFNSVFRVLQELFPQVDSRFLKAVSLEYPDVDLAVEAVLVETMSDIREQPLTMGSSSNSRSSLGFSNDNGKAGKVKSTKDHVVVNSFISERSTEDHASSVDGSSLGVTEAIDAENSENKANCYYVHPPLETFGETNNINADTASPVVIRENASLDDHDQVHVDENTLVASESNRFVDISETNLAAEDIEKDGSVTNSVNSEDELVLSSVLTRSEQICSTEYLDEVIEDAKNNKKMLASAMNSVIDLMKVVESKEKAAEQADEDATRGCSDILAKVDEVKHALLRAKEANDMHAGEVNAEKAILATELKELQLRLFNLSDERNKALAILEEMHRALEIRMAAALEEIASAEQKKLERERSAREALLYQESQMEKVVEESKKLKLEALENSKLQEFLMDRGHTIDILQGEIAVKCQDVLLLKEKFDKRIPLSQILSSSQTSSIFASSSSSFVSTATPLEAEAENYETPKKNLEQYDSYGIFDNNGNEETTNSPSGKEKKVVSELKGVLDDDEWELFDNGCCR 521
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01000 521 Coils Coil 326 361 - -
Cobi6g01000 521 Coils Coil 294 321 - -
Cobi6g01000 521 MobiDBLite consensus disorder prediction 51 75 - -
Cobi6g01000 521 MobiDBLite consensus disorder prediction 477 497 - -
Cobi6g01000 521 MobiDBLite consensus disorder prediction 51 73 - -
Cobi6g01000 521 ProSiteProfiles CUE domain profile. 2 44 IPR003892 GO:0043130(InterPro)
Cobi6g01000 521 PANTHER OS10G0315400 PROTEIN 1 518 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01000 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:6505195 Cobi6g01000 Cobi-Chr6:8039811 dispersed
Cobi Cobi-Chr4:6510315 Cobi6g01000 Cobi-Chr6:8039811 dispersed
Cobi Cobi-Chr6:8039811 Cobi6g01143 Cobi-Chr6:9245989 dispersed
Cobi Cobi-Chr2:70840212 Cobi6g01000 Cobi-Chr6:8039811 wgd
Cobi Cobi-Chr4:6783497 Cobi6g01000 Cobi-Chr6:8039811 wgd