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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01364 ATGGCGTCTCACTCCTTAACTTGTTGTACCAACTTTCGCTTCGCACTTAACTTATCCTCCAAACCCCAATTGGATTCTGGACTCAGATCATCTAATCGATACGTATATAGCTTACCCACTTCATCGATTCGCGCCATGGGTTCTTCGTCTTCTTCATCGCAGAAACCAGATACCAGAACCAATCAACAAGAGGATTATAAATCTGTTAGTGAACAAGAATGGAAGAAGAAGCTGAGCGGAGAACAGTTTTATGTAACTCGAAAAAAGGGAACAGAAAGGGCGTTTACAGGGGAATACTGGAATACGAAAACCCCTGGGACTTACCATTGCATCTGCTGTGACACTCCGCTCTTCGAGTCAACCACGAAATTCGATAGTGGAACAGGTTGGCCATCATATTACAAGCCAATAGGAACAAATGTGAAGTCGAAGCTCGATCTTTCAATCATATTTATGCCCCGACAAGAAGTCTTATGTGCGGTTTGTGATGCTCATCTTGGTCATGTTTTCGACGATGGTCCTCCGCCCACCGGAAAACGTTATTGCATCAACAGCGCTTCTCTGAAATTGAACCCAAAGTAG 582 43.99 MASHSLTCCTNFRFALNLSSKPQLDSGLRSSNRYVYSLPTSSIRAMGSSSSSSQKPDTRTNQQEDYKSVSEQEWKKKLSGEQFYVTRKKGTERAFTGEYWNTKTPGTYHCICCDTPLFESTTKFDSGTGWPSYYKPIGTNVKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLNPK 193
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01364 193 MobiDBLite consensus disorder prediction 43 59 - -
Cobi6g01364 193 Pfam SelR domain 73 191 IPR002579 GO:0033743(InterPro)
Cobi6g01364 193 Gene3D Peptide methionine sulfoxide reductase. 49 193 - -
Cobi6g01364 193 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 71 193 IPR002579 GO:0033743(InterPro)
Cobi6g01364 193 FunFam Peptide methionine sulfoxide reductase MsrB 62 193 - -
Cobi6g01364 193 PANTHER METHIONINE SULFOXIDE REDUCTASE 45 192 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Cobi6g01364 193 MobiDBLite consensus disorder prediction 43 71 - -
Cobi6g01364 193 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 70 192 IPR002579 GO:0033743(InterPro)
Cobi6g01364 193 SUPERFAMILY Mss4-like 69 192 IPR011057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01364 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:84567820 Cobi6g01364 Cobi-Chr6:11070070 dispersed
Cobi Cobi-Chr4:10523037 Cobi6g01364 Cobi-Chr6:11070070 transposed
Cobi Cobi-Chr6:83875 Cobi6g01364 Cobi-Chr6:11070070 wgd