AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01380 ATGCTTAAGCTGAGCACAAACCATGGACAATATACTCATCCATCATTTCGTTATCAGGATTTGGTGAAAGTAATGGCTACTCGGAATTTGGAGAAATTAGCGTCGATTGATGCTCAGTTGAGGCTTTTAGTTCCCGGGAAAGTTTCAGAGGATGATAAGCTGATTGAGTATGATGCTTTGCTTTTGGATAAGTTTCTAGACATTCTTCAGGATTTACACGGTGAAGATCTCAAGGAAGCGGTTCAAGAATGCTATGAGCTTTCTGCTGAATATGAAGGAAAACGTGACCCGAAGAAGCTGGAGGAGCTTGGAAGTCTGTTGACAAGTTTAGATCCTGGGGACTCGATTGTCATTGCAAAAGCCTTTTCTCACATGCTTAGCTTAGCCAATCTGGCTGAAGAGGTTCAGATCGCTTACCGCCGAAGAATCAAATTAAAGAAAGGTGATTTTGCTGACGAGGCGAATGCAACAACCGAATCTGACATTGAAGAAACTCTTAAGAAACTTGTGCATAAGCTTAACAAGTCCCCTGAAGAGGTTTTTGATGCACTCAAGAATCAAACAGTTGACTTGGTGTTGACCGCTCATCCAACTCAATCCGTCCGTCGATCTTTGCTTCAAAAGCATGGAAGGATTCGTGACTGTCTGGCTCAGTTATATGCCAAAGACATAACTCCTGATGATAAGCAAGAACTAGATGAGGCTTTACATAGAGAAATTCAAGCTGCTTTCCGTACAGATGAAATTAGGCGGACCCCACCGACCCCACAAGATGAAATGAGAGCGGGAATGAGTTACTTTCATGAAACTATCTGGAAGGGTGTTCCTAAATTCTTACGACGTGTCGACACTGCTTTAAAGAATATCGGGATTAATGAACGCGTTCCCTATAATGCACCTCTTATTCAATTCTCATCATGGATGGGTGGTGATCGTGATGGCAATCCGAGGGTGACTCCTGAGGTAACAAGGGATGTTTGTTTACTAGCCAGAATGATGGCTGCAAATATGTACTTTTCTCAGATAGAGGAACTAATGTTTGAGATGTCCATGTGGCGTTGTAACGACGAACTACGTGTTCGAGCGGAAGAAATATATAGAACAGCAAGAAGTGATGTGAAGCACTACATAGAGTTTTGGAAACGGGTTCCTCCCACTGAACCTTACCGTGTAATTCTTAGTGATGTAAGGGACAAATTGTATAATACCCGTGAACGAGCTCGCCATTTGTTAGCTCATGGGATATCTGACATCCCAGAGGAAGCTGTTTATACCAATGTGGAACAGTTCTTGGAACCACTGGAGCTCTGTTACAGATCACTATGCGTGTGTGGAGACCGTGTGATTGCTGATGGAAGCCTTCTTGACTTTCTAAGACAAGTGTCAACATTCGGACTCTCACTAGTCAAACTTGACATAAGGCAAGAATCAGAGCGCCACACTGACGTCCTCGATGCAATCACACAACATCTAGAAATCGGGTCATATCGTGAATGGTCTGAAGAAAAACGCCAAGAATGGCTTCTATCTGAACTCAGTGGAAAACGTCCTCTTTTCGGCTCCGACCTTCCAAAAACCGAGGAAGTTAAGGACGTTTTAGACACGTTTAATGTTTTAGCCGAACTCCCATCCGACTGTTTTGGCGCTTACATCATCTCCATGGCCACGTCACCATCCGATGTCCTAGCTGTTGAGCTTCTTCAACGTGAATGCCACGTCAAACACCCATTACGTGTGGTCCCACTTTTTGAAAAACTTGCTGACCTGGAGGCAGCCCCCGCCGCCATGGCCCGACTCTTCTCAATTGAGTGGTACAAAAACCGAATCGACGGGAAACAAGAAGTCATGATCGGGTACTCGGATTCAGGAAAAGATGCGGGTCGGTTTTCGGCTGCATGGCAGCTTTATAAAGCTCAAGAAGAGATTATTAAAGTGGCTAAAGAGTTTGGAGTCAAACTGGTTATGTTTCACGGGCGTGGTGGGACTGTGGGTCGAGGTGGCGGGCCCACACATTTGGCTATCTTGTCTCAACCGCCAGACACGATTCACGGGTCGTTAAGAGTCACAGTTCAGGGTGAGGTTATAGAGCAGTCTTTTGGTGAGGAACATTTGTGTTTTAGAACACTTCAGAGGTTTTGTGCAGCTACACTTGAGCACGGGATGAACCCGCCAATCTCACCGAAGCCCGAGTGGCGTGAACTTATGGACCAGATGGCGGTTGTTGCAACTGAGCATTATCGGTCTATTGTATTCAAGGAACCACGTTTTGTCGAGTATTTCCGCCTTGCAACACCTGAACTTGAATACGGGCGTATGAACATAGGAAGCCGTCCGTCAAAACGAAAACCGAGTGGTGGCATTGAGTCACTTCGAGCCATTCCATGGATCTTTGCATGGACCCAAACCCGGTTCCATCTCCCGGTTTGGCTCGGGTTTGGGGCGGCATTCAAACACGCCATTCAAAAAGACAGCAAGAATCTTCAAATGCTTCATGAAATGTACAAAACATGGCCCTTTTTTCGGGTCACAATAGATTTAGTTGAAATGGTGTTTGCTAAAGGTGACCCAGGAATTGCGGCCCTAAATGACAAACTACTTGTGTCTGAGGATTTATGGTCGTTTGGTGAATCTTTGAGAGAAAACTATGAAGAAACCAAAGATTATCTCCTCAAGATTGCGGGACACAAGGATCTTCTAGAAGGTGATCCTTACTTGAAACAAAGAATCAGGTTGCGTGATTCATACATCACAACCTTAAATGTTTGTCAAGCTTATACACTAAAACGGATCCGAGACCCAAACTATCACGTGACACTAAGGCCTCATATTTCCAAAGAATACGCGGAGGCAAGCAAACCGGCTGATGAGCTTATTAACCTGAACCCGACCAGTGAGTATGCACCTGGTTTGGAGGACACACTCATCTTGACCATGAAGGGGATTGCTGCTGGAATGCAGAACACCGGTTGA 2970 45.12 MLKLSTNHGQYTHPSFRYQDLVKVMATRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKEAVQECYELSAEYEGKRDPKKLEELGSLLTSLDPGDSIVIAKAFSHMLSLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETLKKLVHKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEELMFEMSMWRCNDELRVRAEEIYRTARSDVKHYIEFWKRVPPTEPYRVILSDVRDKLYNTRERARHLLAHGISDIPEEAVYTNVEQFLEPLELCYRSLCVCGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESERHTDVLDAITQHLEIGSYREWSEEKRQEWLLSELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAAMARLFSIEWYKNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEEIIKVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPKPEWRELMDQMAVVATEHYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLHEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRENYEETKDYLLKIAGHKDLLEGDPYLKQRIRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAEASKPADELINLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 989
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 464 484 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 655 684 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 244 260 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 304 319 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 191 204 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 613 633 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 PRINTS Phosphoenolpyruvate carboxylase signature 787 813 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 192 203 IPR018129 -
Cobi6g01380 989 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 615 627 IPR033129 -
Cobi6g01380 989 Hamap Phosphoenolpyruvate carboxylase [ppc]. 47 989 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 57 989 IPR015813 GO:0003824(InterPro)
Cobi6g01380 989 FunFam Phosphoenolpyruvate carboxylase 1 332 467 - -
Cobi6g01380 989 Pfam Phosphoenolpyruvate carboxylase 58 989 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi6g01380 989 Gene3D Phosphoenolpyruvate-pyruvate domain 332 467 - -
Cobi6g01380 989 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 50 989 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01380 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
69669 Cobi11g02482 Cobi6g01380
70167 Cobi12g02280 Cobi6g01380
71820 Cobi3g01033 Cobi6g01380
378085 Cobi4g03052 Cobi6g01380
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:5719790 Cobi6g01380 Cobi-Chr6:11194914 dispersed
Cobi Cobi-Chr5:76917744 Cobi6g01380 Cobi-Chr6:11194914 dispersed
Cobi Cobi-Chr11:68647771 Cobi6g01380 Cobi-Chr6:11194914 wgd
Cobi Cobi-Chr3:13357097 Cobi6g01380 Cobi-Chr6:11194914 wgd
Cobi Cobi-Chr4:79624832 Cobi6g01380 Cobi-Chr6:11194914 wgd