AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi6g01387 | ATGGCTTCCGGGTTGTTAGACGCCGGTAAAATCAACAAAGGGAAGAGTAGATGGGGAGAGGGTAATAAAGTTTACACAAGAAGGTTGAAAAAACCCACCAAGACCGCCGCTGCCTCCCCGACCGCAACCGATGCGGTCGCTGTTGCTTCACCGACCACCAAACCCGCTTCTCCACCTGCTACCCCTAATAACCATCAAACCCTACAAACACTAGCCACAAATTCAGAAACCCAACTACTGTCCCCTGTACTAGAGGCGTCTAATGAGCAGTCGGTTCAGAATCTGGACCCACCCGAAAACGAGGTGGTTAAACCGGTTGTTGTGGTGGTGGATGGATGGGTTAAAATTAATCTAAAAGCTGCGAAGTCTAAAAGTGAAATTATTGAGCTTACCGAGACGATGAAAGCTAAACTTGAACGAGTTAGGCTTATGACTCGAAAGCTTGAAGATAAAGAAGCTGAGTTAACTGCCTTTTCAACTATTTACAATCATACTCAGTATTCAGGTAACGAGGTTAATGACGTAGTTGATAGAAGAGCTTTGTTTAGAGTTAATTCAGAAGTCGGTTCGGTTACCAACAGTGTTATAAGACCTTTCCATCAGTTAAGTGTATCTGTGGTGAATAATAATAATAATAATCACCTTAATAATAATATTAACCATGGAGTTGGTGAGTTTGTGGAGAAAGAAAAACGAACACCGAAAGCGAACCCGTATTATCAAAGTTCAGAATTTCTTTTAGGTAAAGATAGATTACCACCTGAAAGCAACAAACGACACAAATCGAACAGTGGAAGAAAACCTAACAAAGATTCAGATCATGTTAAGTTGTTCAGGAGCTGCAACAGTTTGTTGCAGAGGTTAATGAAGCACAAACACGGTTGGGTGTTTAATGAACCGGTTAACGCGAAGATGTTAGGGCTTCACGATTACCATGACATCATTGAGCACCCGATGGATTTGGGGACGATTAAGAGCCGACTCGCACAGAATTTCTACAAGTCCCCAATCGAGTTTGCAGAAGATGTCAGACTCGTGTTTCGTAACGCGATGTTGTATAATCAGAAAGGACAAGATGTGCACACTATGGCTGAACAGTTATCTGATATTTTTGAAGAAAAATGGCCTGTGATTGAATATGAAACCGAATCGAATCCAAATTTGAGATATGGGATGATTTATGATCCAAACACTCCAACTCCAACTTCAAGAAAGGTTCCTCATTTTGCACATGATGCTTCAAGAATGCCGTACACGTCAGAATTGATGGGCCCGCCTGTGCTGACTAGACAAAATCCCCCGCCAACAAGGACACCTGTACTGAAGAAACCAAAAGCTAGGGATGTGAATAAGAGGAACATGACTTTTGAAGAGAAGCAAAAACTAAGTACAAATCTTCAGAGTTTACCATCTGAGAAGCTTGATAATATTGTTCAGATTATTAAAAAGAACGCAACGGTTTCGCAACATGATGATGAGATTGAAGTTGATATTGACAGTGTTGATATTGAAACTCTTTGGGAACTTGATCGGTTTGTTACTAATTATAAGAAGAATTTGAGCAAGCATAAAAGGAAAGCTGAACTTGCTCAACAAGCAAGGGAACAAGCTGGCGAAGTGCATCAGATTATGAACCCAGCACAATCGTTTCCGGGCGCGCTAAAAGAAGATAAAACAAATGAGAAGACACTCGCTGTGATTCGTCTTCAAGTGATTCAGATAGTGATAGCTCTTCTTCAGATGGATCAGATACAGGTCACTCGCCTAAAAATTGAGCGGTGCAGATTAAGTTGCAGAATGTTAACAGCAAACAAAGCATGA | 1821 | 41.24 | MASGLLDAGKINKGKSRWGEGNKVYTRRLKKPTKTAAASPTATDAVAVASPTTKPASPPATPNNHQTLQTLATNSETQLLSPVLEASNEQSVQNLDPPENEVVKPVVVVVDGWVKINLKAAKSKSEIIELTETMKAKLERVRLMTRKLEDKEAELTAFSTIYNHTQYSGNEVNDVVDRRALFRVNSEVGSVTNSVIRPFHQLSVSVVNNNNNNHLNNNINHGVGEFVEKEKRTPKANPYYQSSEFLLGKDRLPPESNKRHKSNSGRKPNKDSDHVKLFRSCNSLLQRLMKHKHGWVFNEPVNAKMLGLHDYHDIIEHPMDLGTIKSRLAQNFYKSPIEFAEDVRLVFRNAMLYNQKGQDVHTMAEQLSDIFEEKWPVIEYETESNPNLRYGMIYDPNTPTPTSRKVPHFAHDASRMPYTSELMGPPVLTRQNPPPTRTPVLKKPKARDVNKRNMTFEEKQKLSTNLQSLPSEKLDNIVQIIKKNATVSQHDDEIEVDIDSVDIETLWELDRFVTNYKKNLSKHKRKAELAQQAREQAGEVHQIMNPAQSFPGALKEDKTNEKTLAVIRLQVIQIVIALLQMDQIQVTRLKIERCRLSCRMLTANKA | 606 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi6g01387 | 606 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Cobi6g01387 | 606 | Gene3D | - | 256 | 389 | IPR036427 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | Gene3D | - | 447 | 526 | IPR038336 | - | |
| Cobi6g01387 | 606 | Coils | Coil | 513 | 533 | - | - | |
| Cobi6g01387 | 606 | Pfam | Bromodomain | 281 | 365 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | SMART | bromo-6 | 270 | 380 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | PANTHER | OSJNBA0053K19.4 PROTEIN | 23 | 555 | - | - | |
| Cobi6g01387 | 606 | Pfam | Bromodomain extra-terminal - transcription regulation | 454 | 514 | IPR027353 | - | |
| Cobi6g01387 | 606 | ProSitePatterns | Bromodomain signature. | 294 | 353 | IPR018359 | - | |
| Cobi6g01387 | 606 | Coils | Coil | 134 | 154 | - | - | |
| Cobi6g01387 | 606 | PRINTS | Bromodomain signature | 342 | 361 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | PRINTS | Bromodomain signature | 308 | 324 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | PRINTS | Bromodomain signature | 324 | 342 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | PRINTS | Bromodomain signature | 292 | 305 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | SUPERFAMILY | Bromodomain | 256 | 378 | IPR036427 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | MobiDBLite | consensus disorder prediction | 420 | 447 | - | - | |
| Cobi6g01387 | 606 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
| Cobi6g01387 | 606 | CDD | Bromo-plant1 | 277 | 375 | IPR037377 | - | |
| Cobi6g01387 | 606 | ProSiteProfiles | NET domain profile. | 444 | 524 | IPR027353 | - | |
| Cobi6g01387 | 606 | MobiDBLite | consensus disorder prediction | 251 | 273 | - | - | |
| Cobi6g01387 | 606 | ProSiteProfiles | Bromodomain profile. | 289 | 361 | IPR001487 | GO:0005515(InterPro) | |
| Cobi6g01387 | 606 | MobiDBLite | consensus disorder prediction | 247 | 273 | - | - | |
| Cobi6g01387 | 606 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi6g01387 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 71816 | Cobi3g01017 | Cobi6g01387 | |
| 378080 | Cobi4g03042 | Cobi6g01387 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cobi | Cobi-Chr5:73879126 | Cobi6g01387 | Cobi-Chr6:11256752 | dispersed | |
| Cobi | Cobi-Chr6:11256752 | Cobi8g02654 | Cobi-Chr8:75890491 | dispersed | |
| Cobi | Cobi-Chr6:11824437 | Cobi6g01387 | Cobi-Chr6:11256752 | transposed | |
| Cobi | Cobi-Chr9:12137622 | Cobi6g01387 | Cobi-Chr6:11256752 | transposed | |
| Cobi | Cobi-Chr3:13266462 | Cobi6g01387 | Cobi-Chr6:11256752 | wgd | |
| Cobi | Cobi-Chr4:79465111 | Cobi6g01387 | Cobi-Chr6:11256752 | wgd |