AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01405 ATGAGAGGATCAAATGTGAAGTACCCATCAAGCGATGGAAATGGTGCTGCAAATGCAAATGGGATCATAAAACTCAACAGGAAATGCAGAGATGTTGTGTTTCTTGTATTCTTCATAGCTTTCTGGATCGCTATGATTGTTAACTCCAGCTTTGGCTTCAACCAAGGAAACCCATTGAGGCTAAACTTTGGATTAGATTACAAAGGAAATGTATGTGGAGGCAAACACAAAGATTTTAACCTTCGCGAATTGGAACTCAAATATTATGTTAATCCTAATCAAGTTTACCAAAGTGGATTAAAAAATAGTGGAGTACAACTATCTAATGCACGAACAATATGTTTAATGGATTGCCCGATACCATCAGAAGATTCTTTAAATTGGGTTTGTGATTATCCGGAAGGAGATCTTCGTCTTTCGTTAGACGACTGGATCGATATGAATTACGATTATTTTGCTGACCTCACTCCTGAATTAAGGAACACTTCTCTTCAGCTTCAAGGGCCTTGTTACCCTGTCATTTTCCCAAGCGTAAACGTTTATTGGAGTTGCCAATTTATTGATCGCCCATCGAATGTGTCGTTGACACATTGGAAGCAAATGAATGGAGCTACTATTAATGATGATATGGTCATAGATAAATCTATTCACAACTCCATCAATGCACGATCTTCGGTATTGAAGAGATATGTTGCTGATGTTGGAAAATCATGGCCCGTGTTGATTGTGTGTGGAGGACTCTTGCCTCTATTTTTATCAATGTTATGGCTTTTAATGATTCGGCATTTCGTAACCGCGATGCCATGGGTTACAGTGTTTTTATTTAACGGCCTCATAATATCAGTCACAATGTTCTACTACTTGAAAGCTGGATGGATCGGAAACGATGCTATCTCGCCCATCATTGGTGAACATGATCCATACTATCATGTTTCTGCAAGGGAGCAACATCATATCCGTGCAGCTGCGTTTCTCATGACTTGTGTTATGATTGTTGCGGTTCTGTCATCTATAGCTATTGTTAGGCGGATTCTTAAGGCAACCTCGGTACTCAAGGTTGCTGCAAAGGTTATAGGAGAAGTTGATGCTCTAATAATATTCCCGTTTATACCATACACAATCCTTGCAATTTTTTACATGTTTTGGTTATCGGCGGCTCTTAATCTTTTTAGCTCGGGTCAAATAGTCAAAAATGACTGCAACACAAATTGCTGCGCTTATGATCTTAAAGCAAAACGAGTGAGCTGTGACGATTGTTGTGGATATAGTATCCGTTATACCTCGCATATTGGAGCTTCAATATTTTTCCACTTGTTTGGATGCTATTGGGCCACTCAGTTTATTATTGCGTGTTCGTCAACTGTGATTGCTGGTTCTGTAGCTTCATATTATTGGGCCCGTGGGGAATCTTCGGCAACAATTCCATTTCTTCCCGTTTTTTCATCGATGAAGCTACTCATGCGATATAGCCTAGGGTCGGTGGCGATTGGGTCCTTGATTGTGTCATTTGTTGAGTCAACTCGTTTCATACTTGAGGCCATACGACGGAGACTAAAAGTTGCTGACATCATGCCCGAAAGTTGGATTAAACGGATGATGTTTTATACTTCTCGGTTTTGCTTAAAATGCATTGAGTTGACTGTAAAATGCGTGAACCGCAATGCATATATTATGATTGCTATAACGGGAAAAGGGTTCTTTAGAGCTTCGGAAATGGCAACCGATTTGATAATTAGTAATATTATGCGTATAGGCAAAGTAAACGTAATCGGGGACGTTATTCTCTTTCTTGGAAAGCTATGTGTAAGTCTTGCAAGTGCACTTTTTGGATTTCTTATGTTGGATACTCACAAATACAAATCATCCCACAACAAGATCACATCCCCATTACTTCCAGTGCTGGCATGTTGGGGTCTCGGGTATGTTGTGGCTACCCTTTTCTTTGCGGTTGTTGAAATGTCGATTGATACGATTATACTTTCGTACTGTCAAGATTCGGAGGAACATCAAGGGACCGCGCATTATGCGCCTTCACTTTTGATTGAAACATTTGATGAACAAAATGAGTTGCCAAGAATTGGACAATGA 2088 39.89 MRGSNVKYPSSDGNGAANANGIIKLNRKCRDVVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLRELELKYYVNPNQVYQSGLKNSGVQLSNARTICLMDCPIPSEDSLNWVCDYPEGDLRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIDRPSNVSLTHWKQMNGATINDDMVIDKSIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSMLWLLMIRHFVTAMPWVTVFLFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILKATSVLKVAAKVIGEVDALIIFPFIPYTILAIFYMFWLSAALNLFSSGQIVKNDCNTNCCAYDLKAKRVSCDDCCGYSIRYTSHIGASIFFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSATIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADIMPESWIKRMMFYTSRFCLKCIELTVKCVNRNAYIMIAITGKGFFRASEMATDLIISNIMRIGKVNVIGDVILFLGKLCVSLASALFGFLMLDTHKYKSSHNKITSPLLPVLACWGLGYVVATLFFAVVEMSIDTIILSYCQDSEEHQGTAHYAPSLLIETFDEQNELPRIGQ 695
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01405 695 Pfam Plasma-membrane choline transporter 325 667 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cobi6g01405 695 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 20 685 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01405 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
378074 Cobi4g03008 Cobi6g01405
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr6:11408194 Cobi7g00003 Cobi-Chr7:26679 dispersed
Cobi Cobi-Chr4:79024478 Cobi6g01405 Cobi-Chr6:11408194 wgd