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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01419 ATGTTATACTCTAGCAAGAACAGACTCTTCTCACCGACCAAACGGTTTAAAGTTAAGTCGACCAGATCTGAACCGGCGAGCATCCCCGCCGACGTCCTTCCGGCTATCGAACGGAGGAAGCTCATTCACTTGTTGCTGTTCGGTGCCGTTGGTCTTCCCGCTGCCGGAATGGTGGCACCTTATTCCGTCTTCTTCCCTCCGTCTAGAGGTGGCATTGTTGCTAAAGATGAGGATGGTAACTCTATTATAGCTTCAGAATGGGTGAAGATCCATGGACCTGGTGATAAAACACTTGCTCAAGGCATAAAGGGAGATCCTACATACATTATGGTTGAAAGCAACACTAGTCTTGCAACATATGGGATTAATGCAGTATGCACCCATCTTGGGTGCATTGTGCCATGGAACACGGTCGAAAAGAAGTTCATTTGCCCATGTCATGGTTCCCAGTACAACAAGGAGGGCACGATTCTTAAAGGCCCTGCTCAACTGTCTTTGGAACTGGCTAATGTGGATGTTAAAGATGACAAAGTGGTGTTTGCTCCATGGACACAAACCGATTTCAGAACAGGTGATGCTCCATTGTGGTCTTAG 594 47.31 MLYSSKNRLFSPTKRFKVKSTRSEPASIPADVLPAIERRKLIHLLLFGAVGLPAAGMVAPYSVFFPPSRGGIVAKDEDGNSIIASEWVKIHGPGDKTLAQGIKGDPTYIMVESNTSLATYGINAVCTHLGCIVPWNTVEKKFICPCHGSQYNKEGTILKGPAQLSLELANVDVKDDKVVFAPWTQTDFRTGDAPLWS 197
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01419 197 SUPERFAMILY ISP domain 34 196 IPR036922 GO:0051537(InterPro)
Cobi6g01419 197 PRINTS Rieske 2Fe-2S subunit signature 142 154 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cobi6g01419 197 PRINTS Rieske 2Fe-2S subunit signature 154 166 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cobi6g01419 197 PRINTS Rieske 2Fe-2S subunit signature 121 132 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cobi6g01419 197 FunFam Cytochrome b6-f complex iron-sulfur subunit 66 197 - -
Cobi6g01419 197 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 87 180 IPR017941 GO:0051537(InterPro)
Cobi6g01419 197 Pfam Rieske [2Fe-2S] domain 104 165 IPR017941 GO:0051537(InterPro)
Cobi6g01419 197 CDD Rieske-cytochrome-b6f 72 197 - -
Cobi6g01419 197 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 15 184 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Cobi6g01419 197 Gene3D - 68 197 IPR036922 GO:0051537(InterPro)
Cobi6g01419 197 Gene3D Single helix bin 25 67 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01419 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71792 Cobi3g00927 Cobi6g01419
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:11311190 Cobi6g01419 Cobi-Chr6:11499410 wgd