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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi9g01282 ATGGCTCAGTCGCTAGCAACACCGGTAGCACCTTCTGTTTCGCTCATCTCCGCCGGATTATCACCTTTCAATTCCAAATCCAGCGTCCTTTCATTCTCGACATTCAATCCTCCCAAGGTTGGTGGATTGAGCATTCGATGTGCTCGTGTGGGAGGAGTGGAGATACCTAACAACAAGAGAGTTCAGTATTCGTTACAGTATATTCATGGAATAGGGCGTACGAGAGCACTTGAGATACTGAATGACTTGAAAATGGACAACAAAATCACCAAAGATTTGACGGAAGATGAGCTTATTGTTCTTCGTGATCAAGTCTCCAAGTACATGATTGAAGGAGACCTTAGGCGGTTTAATGCGCTTGCAATCAGGAGATTGAAAGAAATTCAGTGCTACCGAGGCATACGCCACATTCAGGGACTGCCTTGTAGAGGACAGCGCACAAAGAACAACTGCAGGACTTTGAAGGGCAAGAAGGTTGCAATTGCTGGCAAAAAGAAGGCTCCTCGTTAG 510 45.88 MAQSLATPVAPSVSLISAGLSPFNSKSSVLSFSTFNPPKVGGLSIRCARVGGVEIPNNKRVQYSLQYIHGIGRTRALEILNDLKMDNKITKDLTEDELIVLRDQVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi9g01282 169 ProSitePatterns Ribosomal protein S13 signature. 132 145 IPR018269 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cobi9g01282 169 Hamap Small ribosomal subunit protein uS13 [rpsM]. 47 163 IPR001892 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cobi9g01282 169 Gene3D 30s ribosomal protein s13, domain 2 117 169 IPR027437 -
Cobi9g01282 169 Pfam Ribosomal protein S13-S18 49 153 IPR001892 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cobi9g01282 169 NCBIfam 30S ribosomal protein S13 49 158 IPR019980 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cobi9g01282 169 ProSiteProfiles Ribosomal protein S13 family profile. 50 156 - -
Cobi9g01282 169 SUPERFAMILY S13-like H2TH domain 48 166 IPR010979 GO:0003676(InterPro)
Cobi9g01282 169 PANTHER 30S RIBOSOMAL PROTEIN S13-40S RIBOSOMAL PROTEIN S18 40 166 - GO:0005739(PANTHER)|GO:0015935(PANTHER)
Cobi9g01282 169 Gene3D - 48 116 - -
Cobi9g01282 169 FunFam 30S ribosomal protein S13 45 116 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi9g01282 K02952 small subunit ribosomal protein S13