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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi16g01893 ATGGGTTACCATTGTGATCATTGTGGGGAAGCAAGATCAATGGTGTATTGTAGATCAGATGCAGCCTACTTATGTTTATCGTGTGATCGTATCGTTCATTCTGCAAACGCATTATCGAAACGCCATTCACGAGCACTTGTATGTGACAGATGCAATTCACAGCCCGCATTGGTTCGATGTATAGAGGAAAAAGTCTCGCTTTGTCAAAATTGCGATTGGGTTGGTCATAACGGGTCAACGAAGCACAGTAAACAGACATTAAATTGTTACTCGGGTTGCCCTTCCGCTGTTGAACTTTCTTCAATTTGGTCGTTTATGTCAGATTCAGATTCGGGCTTTGTTAACGGGTCGACGTGTGAGCAAGAAATGGGTTCAATGAGCATTGCTGATAATACCCAAAGACCTTCTAGAAGCAATAATAATAATCAAGATTTACTTGCAAATGGTTTGCAGGGTGGGAATAATTCAGATGTTTGGACGGGTCAATCAACTGTTCATGTGGATAATAGACCGCAAAATGAGGTTCAACAAACTAAGATATCGCATTCGGGTACAAAAGATCTTGGCCCGTTAGTTGATGATGATGGATTCTATGTTGACTTTAGTATGGATGAAGTTGATTTGAGCATTGAGAATTATGAAGAACTCTTTGGCGTAGGACATAACGATCCCAAACATCTTTTTGCAAAAGACGGGATTGATAGTTTGTTTGGAGGTGCCGAATCTTCATATGCCGGCAAGGAATCTTCAACGTGGCACGCAAATCGAGCACAACCAGCATGCAGTAATGCAGCATCGGCCGATTCGTTAATGAGCTGTAAAACCGAACCGAATCCTAGTTATGCAAGGCAACACTCAAATATCTCATTTTCAAGTCTGACAGGAGAAAGCAGTGCTGGTGAATATCAAGACTGTGATGCTTCTTCAATGCTTCTCATGGGCGAGCCACCATGGTGGAACCCGGGGCCCAGCCATGATCAAACCACCACCCCTTCCGGCAGCAGAAGTGATGCTGTCCTACGTTACAAGGAAAAAAAGAAAATGCGAAAATTTGAGAAGAGAGTAAGATATGCAACACGAAAAGAACGCGCTGATGTAAGAAAGCGTGTGAAAGGGAGGTTTGTGAAGGCGGGTGACGCTTATGATTATGACCCGTTGATTCAAACTCGAAGCTTTTAA 1179 43.0 MGYHCDHCGEARSMVYCRSDAAYLCLSCDRIVHSANALSKRHSRALVCDRCNSQPALVRCIEEKVSLCQNCDWVGHNGSTKHSKQTLNCYSGCPSAVELSSIWSFMSDSDSGFVNGSTCEQEMGSMSIADNTQRPSRSNNNNQDLLANGLQGGNNSDVWTGQSTVHVDNRPQNEVQQTKISHSGTKDLGPLVDDDGFYVDFSMDEVDLSIENYEELFGVGHNDPKHLFAKDGIDSLFGGAESSYAGKESSTWHANRAQPACSNAASADSLMSCKTEPNPSYARQHSNISFSSLTGESSAGEYQDCDASSMLLMGEPPWWNPGPSHDQTTTPSGSRSDAVLRYKEKKKMRKFEKRVRYATRKERADVRKRVKGRFVKAGDAYDYDPLIQTRSF 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi16g01893 392 CDD Bbox1-BBX-like 5 44 IPR049808 -
Dapi16g01893 392 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
Dapi16g01893 392 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Dapi16g01893 392 SMART bboxneu5 48 87 IPR000315 GO:0008270(InterPro)
Dapi16g01893 392 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515(InterPro)
Dapi16g01893 392 CDD Bbox1-BBX-like 47 84 IPR049808 -
Dapi16g01893 392 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Dapi16g01893 392 Pfam CCT motif 335 377 IPR010402 GO:0005515(InterPro)
Dapi16g01893 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 381 - -
Dapi16g01893 392 MobiDBLite consensus disorder prediction 124 148 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi16g01893 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
74051 Dapi12g01324 Dapi16g01893
75738 Dapi16g01893 Dapi17g01152
75739 Dapi16g01893 Dapi18g00777
75740 Dapi16g01893 Dapi2g00739
256721 Dapi23g00263 Dapi16g01893
381652 Dapi16g01893 Dapi23g00263
381653 Dapi16g01893 Dapi7g00243
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:71450559 Dapi1g01130 Dapi-Chr1:55080590 dispersed
Dapi Dapi-Chr12:95319924 Dapi16g01893 Dapi-Chr16:71450559 wgd
Dapi Dapi-Chr16:71450559 Dapi17g01152 Dapi-Chr17:47994810 wgd
Dapi Dapi-Chr16:71450559 Dapi18g00777 Dapi-Chr18:19901571 wgd
Dapi Dapi-Chr16:71450559 Dapi2g00739 Dapi-Chr2:14492898 wgd
Dapi Dapi-Chr16:71450559 Dapi23g00263 Dapi-Chr23:5343437 wgd
Dapi Dapi-Chr16:71450559 Dapi32g02137 Dapi-Chr32:81335164 wgd
Dapi Dapi-Chr16:71450559 Dapi6g00898 Dapi-Chr6:14204549 wgd
Dapi Dapi-Chr16:71450559 Dapi7g00243 Dapi-Chr7:4785156 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Dapi26g01148 DST 289 400 C2C2-CO-like Transcription Factor family AT1G68520 42.657 6.87e-21 90.9
Dapi5g01285 DST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.447 7.00e-83 243.0
Dapi5g01240 ACH,DST 1 98 C2C2-CO-like Transcription Factor family AT4G27310 47.475 4.38e-27 101.0
Dapi23g00118 DST,WGDA 1 206 C2C2-CO-like Transcription Factor family AT1G75540 53.302 2.31e-64 200.0
Dapi18g00777 ACH,DST 4 373 C2C2-CO-like Transcription Factor family AT5G48250 54.692 4.79e-134 386.0
Dapi18g00841 ACH,DST 1 224 C2C2-CO-like Transcription Factor family AT1G75540 50.22 1.96e-62 197.0
Dapi18g00857 ACH,DST 1 296 C2C2-CO-like Transcription Factor family AT1G78600 50.0 2.16e-86 257.0
Dapi19g01883 ACH,DST,WGDA 258 329 C2C2-CO-like Transcription Factor family AT5G57660 42.667 5.03e-11 61.6
Dapi19g01015 DST,WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 52.507 1.85e-122 356.0
Dapi2g00739 ACH,DST 94 372 C2C2-CO-like Transcription Factor family AT3G07650 50.173 2.13e-88 266.0
Dapi2g00679 ACH,DST 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.684 7.34e-61 194.0
Dapi2g00659 ACH,DST 1 296 C2C2-CO-like Transcription Factor family AT1G78600 50.0 8.73e-86 256.0
Dapi21g01421 DST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.447 7.00e-83 243.0
Dapi21g01371 ACH,DST 1 98 C2C2-CO-like Transcription Factor family AT4G27310 47.475 4.38e-27 101.0
Dapi18g01789 ACH,DST 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 3.83e-10 57.8
Dapi18g02832 . 10 267 C2C2-CO-like Transcription Factor family AT1G68190 37.458 1.25e-53 180.0
Dapi10g01154 DST 289 392 C2C2-CO-like Transcription Factor family AT1G68520 40.741 2.88e-16 77.0
Dapi1g01345 DST,WGDA 185 273 C2C2-CO-like Transcription Factor family AT2G24790 39.326 4.35e-12 62.4
Dapi12g01324 ACH,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.325 3.82e-133 383.0
Dapi12g01351 ACH,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.258 3.89e-95 281.0
Dapi12g01462 . 3 165 C2C2-CO-like Transcription Factor family AT4G27310 40.588 2.40e-30 109.0
Dapi12g01718 DST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 48.698 1.04e-93 284.0
Dapi12g02045 ACH,DST,WGDA 225 276 C2C2-CO-like Transcription Factor family AT2G24790 55.769 1.59e-12 65.1
Dapi1g02244 DST,WGDA 11 314 C2C2-CO-like Transcription Factor family AT2G47890 40.294 6.61e-75 234.0
Dapi10g00304 ACH,DST,WGDA 4 98 C2C2-CO-like Transcription Factor family AT5G54470 55.208 3.03e-29 106.0
Dapi10g00044 DST 238 401 C2C2-CO-like Transcription Factor family AT1G68520 47.59 2.21e-36 128.0
Dapi32g02137 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.676 4.33e-136 392.0
Dapi20g00635 ACH 309 388 C2C2-CO-like Transcription Factor family AT5G24930 38.75 2.39e-11 63.2
Dapi11g00603 DST,WGDA 157 270 C2C2-CO-like Transcription Factor family AT2G24790 33.613 1.84e-07 49.3
Dapi27g00673 DST,WGDA 157 270 C2C2-CO-like Transcription Factor family AT2G24790 33.613 2.04e-07 48.9
Dapi3g00787 DST,WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 52.243 5.69e-122 355.0
Dapi21g01338 . 1 98 C2C2-CO-like Transcription Factor family AT4G27310 47.475 5.71e-27 101.0
Dapi16g01893 ACH,DST,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.676 4.24e-137 394.0
Dapi16g02019 ACH 1 200 C2C2-CO-like Transcription Factor family AT4G39070 54.5 1.16e-60 187.0
Dapi25g00706 ACH,DST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.308 1.42e-76 235.0
Dapi31g00029 ACH 237 327 C2C2-CO-like Transcription Factor family AT5G15850 38.043 1.35e-11 60.5
Dapi1g02599 ACH,DST,WGDA 289 399 C2C2-CO-like Transcription Factor family AT1G68520 43.75 9.75e-21 89.7
Dapi15g01069 WGDA 270 380 C2C2-CO-like Transcription Factor family AT5G24930 37.5 4.27e-12 65.5
Dapi31g01460 WGDA 270 380 C2C2-CO-like Transcription Factor family AT5G24930 35.714 2.34e-11 62.8
Dapi8g02769 ACH,DST 334 383 C2C2-CO-like Transcription Factor family AT5G24930 52.0 1.17e-11 62.8
Dapi25g01837 ACH,DST 284 329 C2C2-CO-like Transcription Factor family AT5G57660 52.174 2.08e-09 52.8
Dapi6g00898 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.703 9.08e-133 381.0
Dapi27g00249 WGDA 5 328 C2C2-CO-like Transcription Factor family AT2G47890 44.032 5.64e-95 285.0
Dapi14g00916 DST,WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 48.485 5.63e-106 313.0
Dapi7g00577 DST,WGDA 335 388 C2C2-CO-like Transcription Factor family AT5G24930 44.444 2.65e-09 55.1
Dapi14g00585 DST 277 400 C2C2-CO-like Transcription Factor family AT1G68520 37.013 3.14e-20 89.0
Dapi14g00552 DST 12 398 C2C2-CO-like Transcription Factor family AT2G33500 38.318 4.44e-77 243.0
Dapi23g00263 ACH,DST,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.998 1.77e-133 385.0
Dapi1g01131 . 1 144 C2C2-CO-like Transcription Factor family AT5G48250 68.707 2.88e-64 200.0
Dapi1g01130 . 183 371 C2C2-CO-like Transcription Factor family AT3G07650 49.758 5.87e-50 168.0
Dapi1g00990 ACH,DST,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.0 2.12e-90 268.0
Dapi1g00742 DST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 48.684 1.69e-93 284.0
Dapi17g02881 DST,WGDA 11 328 C2C2-CO-like Transcription Factor family AT2G47890 43.22 1.41e-86 263.0
Dapi9g02129 ACH,DST 284 351 C2C2-CO-like Transcription Factor family AT5G57660 42.647 7.24e-10 57.8
Dapi9g00698 ACH,DST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.195 1.50e-76 235.0
Dapi9g00665 . 127 320 C2C2-CO-like Transcription Factor family AT3G02380 31.1 6.22e-18 80.1
Dapi4g00668 . 309 388 C2C2-CO-like Transcription Factor family AT5G24930 38.75 2.69e-11 62.8
Dapi23g01911 ACH,DST 287 399 C2C2-CO-like Transcription Factor family AT1G68520 32.743 4.29e-06 46.2
Dapi26g00027 DST 238 401 C2C2-CO-like Transcription Factor family AT1G68520 47.59 2.21e-36 128.0
Dapi6g00235 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.95 5.12e-98 295.0
Dapi24g02844 ACH,DST 334 383 C2C2-CO-like Transcription Factor family AT5G24930 52.0 1.26e-11 62.8
Dapi22g00243 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.809 1.18e-96 292.0
Dapi16g01188 . 233 328 C2C2-CO-like Transcription Factor family AT5G15850 51.961 4.18e-23 91.3
Dapi8g01600 DST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.023 5.57e-78 238.0
Dapi7g00243 ACH,DST,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.771 9.40e-133 384.0
Dapi7g00095 DST,WGDA 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.358 4.04e-64 199.0
Dapi28g01416 DST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 48.698 1.04e-93 284.0
Dapi30g00302 ACH,DST,WGDA 4 135 C2C2-CO-like Transcription Factor family AT5G54470 44.361 1.01e-27 103.0
Dapi30g00579 DST 12 398 C2C2-CO-like Transcription Factor family AT2G33500 38.605 2.11e-77 244.0
Dapi30g00953 DST,WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 48.485 5.63e-106 313.0
Dapi26g00281 ACH,DST,WGDA 4 98 C2C2-CO-like Transcription Factor family AT5G54470 55.208 3.03e-29 106.0
Dapi28g01738 ACH,DST,WGDA 225 276 C2C2-CO-like Transcription Factor family AT2G24790 55.769 1.59e-12 65.1
Dapi7g01945 ACH,DST 287 399 C2C2-CO-like Transcription Factor family AT1G68520 32.743 4.37e-06 46.2
Dapi6g01440 ACH,DST 1 330 C2C2-CO-like Transcription Factor family AT1G75540 46.377 2.87e-76 234.0
Dapi22g01447 ACH,DST 1 330 C2C2-CO-like Transcription Factor family AT1G75540 45.93 1.48e-74 230.0
Dapi23g00597 DST,WGDA 335 388 C2C2-CO-like Transcription Factor family AT5G24930 44.444 2.60e-09 55.1
Dapi14g00284 ACH,DST,WGDA 4 135 C2C2-CO-like Transcription Factor family AT5G54470 44.361 1.01e-27 103.0
Dapi17g01826 DST,WGDA 185 273 C2C2-CO-like Transcription Factor family AT2G24790 39.326 4.88e-12 62.4
Dapi17g01152 ACH,WGDA 1 372 C2C2-CO-like Transcription Factor family AT5G48250 53.401 3.10e-124 361.0
Dapi17g01116 ACH,DST,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 49.515 6.46e-91 270.0
Dapi17g00770 DST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.604 8.53e-95 287.0
Dapi17g00441 ACH,WGDA 202 270 C2C2-CO-like Transcription Factor family AT2G24790 49.275 1.88e-12 64.3
Dapi29g00792 DST,WGDA 13 347 C2C2-CO-like Transcription Factor family AT3G02380 49.148 1.62e-106 314.0
Dapi24g01362 ACH,DST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.023 8.69e-78 238.0
Dapi3g01769 DST,WGDA 258 329 C2C2-CO-like Transcription Factor family AT5G57660 42.667 6.89e-11 61.6
Dapi13g00816 DST,WGDA 13 216 C2C2-CO-like Transcription Factor family AT3G02380 47.273 7.21e-59 188.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi CCT 4.2e-15 CL0281 TF C2C2-CO-like