AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi16g01895 ATGGCGATTTCCGGCGTCGACTACAATCTCGAATATCGGTCGAAGACCGATGACGCCTGGTACACCTGCGCCGTCGTTCTCGAACACGGCATTCAGCTCCGTGTAAAGTTCAAGGACTTCGTTCAAAGCTACTTCGACGAGGTTTTCTCCGTCTCCGATTTCTCCACTCACCGCGAATTCGAACAACTCCTCAACAGATTCCGTCCAGTCTCCAAACCGCTCGATGATAATGAATGTTCCAGAGTCATTGAAGGCATGCTCGTCTGCGCAATATACAGACGCCACGAAGAAGTTCTGTATTTTGACGCTATTGTTGAAGCTGTGCAATATAAACAGCATACACCCGAGGTGTGTTTATGCACTTACTTACTGTTCTGGCAGCATGGTTCTGGTGAGGGGACTATAACAGCAGCAACCGTTGAGGACATATGTCTCATTACGCATGGTGCTATTCATCCCAAAATTGCCGAATTCATAAACCTTGCGAAACAAGAACTTAAAGAGGCCTCGGTTCCGTCACAGGCAGGGGGGGAAAGATTCTTGCTTGAATTAAGGGATCATGACGTAGATATCGGAGGTGTGAAAAAAAAAACTGATAGTCATCATTATATTTTATTGGAAAACTTGGAGAAAGATCTATGCCCATTGTTAATGATGAATTTCATACACGAGCATACTTCAATCACTCCTCAAGCATATGTTTTTCCAAGTTTGTTATGGGAAACATATGCACGAGGAGCTATCGTGGTGGATAGCAGTACAAAGTTGAAGAGGATTCGTGAATTTATAAAGAATCCAAATCACTTCATTACATCTTTCTCTGGAAGGCCTTGGGCAATAGCTGAAGATGAGCTTAGAACTGGAACATTCAATACAACCCTGCAGAGCTTGCAGCCTAAGTATGAGAACTACAGTACACAGAATGAGCTGAAGGTTGTTTGGTTAGGAACAGAAGAATACAGAAAATCTAAACAGCTAAAAGATTTGTATATGGAATTTCGCAATCATCTAAATGGGCTTTTGAAGAGGTTAGACATTGAGGAGAAGAAGAACCGGGACCCATTCAGTTTCTGCAAATTGCAATAA 1086 42.82 MAISGVDYNLEYRSKTDDAWYTCAVVLEHGIQLRVKFKDFVQSYFDEVFSVSDFSTHREFEQLLNRFRPVSKPLDDNECSRVIEGMLVCAIYRRHEEVLYFDAIVEAVQYKQHTPEVCLCTYLLFWQHGSGEGTITAATVEDICLITHGAIHPKIAEFINLAKQELKEASVPSQAGGERFLLELRDHDVDIGGVKKKTDSHHYILLENLEKDLCPLLMMNFIHEHTSITPQAYVFPSLLWETYARGAIVVDSSTKLKRIREFIKNPNHFITSFSGRPWAIAEDELRTGTFNTTLQSLQPKYENYSTQNELKVVWLGTEEYRKSKQLKDLYMEFRNHLNGLLKRLDIEEKKNRDPFSFCKLQ 361
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi16g01895 361 Pfam SAWADEE domain 7 144 IPR032001 GO:0003682(InterPro)
Dapi16g01895 361 PANTHER SAWADEE PROTEIN 6 350 - -
Dapi16g01895 361 Gene3D - 74 145 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi16g01895 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
256722 Dapi23g00255 Dapi16g01895
381654 Dapi16g01895 Dapi23g00255
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:71525135 Dapi32g02143 Dapi-Chr32:81535251 dispersed
Dapi Dapi-Chr16:71525135 Dapi16g01897 Dapi-Chr16:71600609 proximal
Dapi Dapi-Chr16:71525135 Dapi23g00255 Dapi-Chr23:5269160 wgd
Dapi Dapi-Chr16:71525135 Dapi32g02139 Dapi-Chr32:81421934 wgd
Dapi Dapi-Chr16:71525135 Dapi7g00235 Dapi-Chr7:4713368 wgd