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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi16g01902 ATGAAAAAGGCGCTGCCGGCGAACGCGAAGATATCGAAGGACGCGAAGGAGACGGTGCAGGAGTGTGTGTCGGAGTTCATCAGTTTCATCACCGGCGAGGCGTCAGATAAGTGTCAACGGGAGAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGTTAGGGTTTGAAGAATATGTGGAGCCTTTGAAAGTATATTTAGCGAAATATAGAGAAGTGGAAGGGGAGAAGACGATTGGAAGACAAGGTGAGAAGGATGGGCCATCAGGCGGCGGGTATAATGATGATGGAGGGTTGGGGAATAGTGTGATTGGACGGCCGCATCACCAGATGTATAGTTCGGGTTCGTATCATCAGATGGGTTTAGGATTAGGGAGTGTGAAGGGCGGCGGTGGTGGTGGCGGCGGCTGCAGATCTTCCGCCAGATAG 441 52.61 MKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLAKYREVEGEKTIGRQGEKDGPSGGGYNDDGGLGNSVIGRPHHQMYSSGSYHQMGLGLGSVKGGGGGGGGCRSSAR 146
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi16g01902 146 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 1 55 IPR003958 -
Dapi16g01902 146 Gene3D Histone, subunit A 1 96 IPR009072 GO:0046982(InterPro)
Dapi16g01902 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 111 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Dapi16g01902 146 SUPERFAMILY Histone-fold 1 86 IPR009072 GO:0046982(InterPro)
Dapi16g01902 146 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Dapi16g01902 146 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Dapi16g01902 146 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Dapi16g01902 146 MobiDBLite consensus disorder prediction 81 121 - -
Dapi16g01902 146 ProSitePatterns NF-YB-HAP3 subunit signature. 22 38 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi16g01902 K08065 nuclear transcription Y subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:71864623 Dapi6g00893 Dapi-Chr6:14183592 dispersed
Dapi Dapi-Chr16:71864623 Dapi18g00784 Dapi-Chr18:19979997 wgd
Dapi Dapi-Chr16:71864623 Dapi2g00732 Dapi-Chr2:14431730 wgd
Dapi Dapi-Chr16:71864623 Dapi23g00249 Dapi-Chr23:5209701 wgd
Dapi Dapi-Chr16:71864623 Dapi32g02161 Dapi-Chr32:82637429 wgd
Dapi Dapi-Chr16:71864623 Dapi7g00229 Dapi-Chr7:4671656 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Dapi15g00931 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 59.341 1.47e-64 196.0
Dapi18g00784 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 87.302 2.06e-78 229.0
Dapi18g01241 . 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 65.306 6.58e-46 145.0
Dapi19g02025 . 43 110 CCAAT-HAP3 Transcription Factor family AT3G53340 77.941 4.55e-35 115.0
Dapi19g01931 . 34 215 CCAAT-HAP3 Transcription Factor family AT2G13570 58.47 2.93e-61 188.0
Dapi19g01645 DST,WGDA 32 121 CCAAT-HAP3 Transcription Factor family AT5G47640 31.25 2.79e-11 57.4
Dapi19g01485 . 1 108 CCAAT-HAP3 Transcription Factor family AT4G14540 73.148 1.35e-53 165.0
Dapi19g01483 . 8 108 CCAAT-HAP3 Transcription Factor family AT4G14540 78.218 3.38e-53 164.0
Dapi30g01809 . 8 147 CCAAT-HAP3 Transcription Factor family AT2G37060 73.611 2.58e-70 208.0
Dapi2g01200 . 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 65.306 6.58e-46 145.0
Dapi2g00732 . 1 153 CCAAT-HAP3 Transcription Factor family AT4G14540 74.074 4.19e-75 221.0
Dapi2g00657 . 43 102 CCAAT-HAP3 Transcription Factor family AT3G53340 78.333 4.00e-29 102.0
Dapi25g01191 . 51 145 CCAAT-HAP3 Transcription Factor family AT2G47810 80.0 2.51e-56 171.0
Dapi1g02242 . 40 147 CCAAT-HAP3 Transcription Factor family AT2G47810 77.778 1.40e-58 178.0
Dapi31g00354 . 8 156 CCAAT-HAP3 Transcription Factor family AT2G37060 72.667 2.07e-70 208.0
Dapi31g00533 . 8 173 CCAAT-HAP3 Transcription Factor family AT2G37060 76.647 3.32e-83 241.0
Dapi32g02161 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 57.937 8.17e-41 131.0
Dapi7g02888 . 50 153 CCAAT-HAP3 Transcription Factor family AT5G47670 80.952 3.10e-60 186.0
Dapi16g01741 . 57 116 CCAAT-HAP3 Transcription Factor family AT4G14540 90.0 2.11e-34 114.0
Dapi16g01902 . 35 126 CCAAT-HAP3 Transcription Factor family AT4G14540 92.391 1.93e-57 174.0
Dapi25g00233 . 1 123 CCAAT-HAP3 Transcription Factor family AT4G14540 86.992 1.10e-75 223.0
Dapi25g01810 . 44 93 CCAAT-HAP3 Transcription Factor family AT2G37060 80.0 5.86e-22 82.8
Dapi6g00893 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 5.58e-76 223.0
Dapi6g00707 . 1 102 CCAAT-HAP3 Transcription Factor family AT1G09030 71.845 1.66e-51 158.0
Dapi27g00238 . 42 157 CCAAT-HAP3 Transcription Factor family AT2G47810 72.727 1.18e-60 184.0
Dapi3g01336 . 8 108 CCAAT-HAP3 Transcription Factor family AT4G14540 78.218 1.05e-52 164.0
Dapi3g01517 DST,WGDA 32 121 CCAAT-HAP3 Transcription Factor family AT5G47640 32.292 6.43e-12 59.3
Dapi7g00721 . 1 121 CCAAT-HAP3 Transcription Factor family AT4G14540 84.298 3.21e-72 212.0
Dapi7g00722 DST,WGDA 43 120 CCAAT-HAP3 Transcription Factor family AT3G53340 50.0 1.36e-24 90.5
Dapi23g00249 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 88.976 1.11e-78 231.0
Dapi24g00913 . 1 123 CCAAT-HAP3 Transcription Factor family AT4G14540 88.618 1.10e-76 225.0
Dapi17g02879 . 40 147 CCAAT-HAP3 Transcription Factor family AT2G47810 77.778 3.47e-58 177.0
Dapi9g01261 . 51 157 CCAAT-HAP3 Transcription Factor family AT2G47810 72.072 1.50e-56 172.0
Dapi14g01844 . 8 147 CCAAT-HAP3 Transcription Factor family AT2G37060 73.611 2.18e-70 209.0
Dapi4g00252 . 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 74.302 1.86e-83 242.0
Dapi21g01628 . 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 58.738 3.46e-74 222.0
Dapi5g01487 . 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 58.738 3.46e-74 222.0
Dapi8g01086 . 1 123 CCAAT-HAP3 Transcription Factor family AT4G14540 88.618 1.04e-76 225.0
Dapi7g00229 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 88.976 1.28e-78 231.0
Dapi9g00212 . 1 123 CCAAT-HAP3 Transcription Factor family AT4G14540 86.992 1.10e-75 223.0
Dapi3g00170 . 13 156 CCAAT-HAP3 Transcription Factor family AT2G37060 76.552 1.11e-74 219.0
Dapi23g02464 . 32 153 CCAAT-HAP3 Transcription Factor family AT5G47670 73.171 1.72e-60 186.0
Dapi32g01956 . 57 116 CCAAT-HAP3 Transcription Factor family AT4G14540 86.667 1.71e-32 110.0
Dapi22g01488 . 44 74 CCAAT-HAP3 Transcription Factor family AT2G37060 83.871 2.99e-11 55.5
Dapi22g00702 . 1 102 CCAAT-HAP3 Transcription Factor family AT1G09030 71.845 1.45e-51 158.0
Dapi23g00736 DST,WGDA 43 120 CCAAT-HAP3 Transcription Factor family AT3G53340 50.0 2.82e-25 92.4
Dapi23g00734 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 82.54 4.82e-73 214.0
Dapi19g00426 . 13 156 CCAAT-HAP3 Transcription Factor family AT2G37060 76.552 1.11e-74 219.0
Dapi3g01833 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 56.915 2.00e-61 188.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi CBFD_NFYB_HMF 1e-20 CL0012 TF NF-YB