AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi16g01986 ATGGAACAATCACCGGCGACGAACATCGGCAGCGAGCCTCACCACGACATGATCACAGCATTCTCAGAATTAACTTCCGCTTCCAGAGAAGAAGCCGCCTTCTTCCTCGAATCTCACAACTACGATCTCGATTCCGCCGTCTCCACCTTCTACGAAACCACCACCGCCGCTGCCGCTCCACCTGGCCGGAACCCTAACCGTTCGTCCGACACTCATTCCCCTTCGTCTTCACCGTCTCGTTCCCGATCAGCTTCCCCCCCTCCTTCACTTGGATTACAGCAATTGGCCGGTGGAACTGGAAGTCCGTATAATCTGCGATCTCGGAATACCGGTGCTGATAAGAAGCCGTCCGGCAGTCGGTCTTCTGGACGAATAAGGACTTTTTCAGATCTGAATCGACCAGGTGATGACTCGGGAAGTGACTCGGATGAACCTCAGGAGTATTATACCGGAGGTGAAAAGAGTGGCATGCTTGTTCAAGAACCAAGAAAGGTGAATGATGTGGAATCTTTGTTTAATCAAGCAAGACAAGCAGGAGCTGAAGAAGGAACTCTTGATCAGTTTCAACCATCGTCAAGTTCTGGAAGCTTCTCTGGAAGAGGAAGGCTTTTATCTGGAGAGACGACAGCAGCTCCTCCTCAGCAATCTGAACCTAGGGCACACACCATCACTTTCTGGGCCAATGGTTTCACTGTAAATGATGGTCCTTTGAGGAGGCTTGAGGATCCCCAAAATGCATCTTTCTTGGCGAGCATAAGCAAGTCTGAGTGTCCCGAAGAACTTAAGCCTGCAACAGGAAGAGCTCCTGTTCATGTCAGTCTTGTGAGAAAGATGGAGGATTACCCTGTCCAGAAACACCGTCAACCCGCCTTTGTTGGGTTGGGTAGAACCCTGGGCTCCACAACTTCTTCAGAAAACACCACTGCCGCCAACCCGGCACCTGCAACTGCTGCTCCAACCCCATTCGTGGGCCTAGTTGTCGATGATGCACTACCGTCTACCTCTATTCAACTACGATTGGCTGATGGGACCCGTATGGTTTCACGTTTCAATTTCCACCACACAATAAGCAACATTCGTTCTTTCATTGATGCATCGAGGCCTGGAGGCCCTCGGGCCTATCAGTTGTTGACAATGGGGTTCCCGCCAAAACAGCTTAATGATTTGAACCAGACAATTGAAGAGGCTGGGTTAGCCAATTCAGTTGTGATCCAGAAACTCTAA 1224 50.41 MEQSPATNIGSEPHHDMITAFSELTSASREEAAFFLESHNYDLDSAVSTFYETTTAAAAPPGRNPNRSSDTHSPSSSPSRSRSASPPPSLGLQQLAGGTGSPYNLRSRNTGADKKPSGSRSSGRIRTFSDLNRPGDDSGSDSDEPQEYYTGGEKSGMLVQEPRKVNDVESLFNQARQAGAEEGTLDQFQPSSSSGSFSGRGRLLSGETTAAPPQQSEPRAHTITFWANGFTVNDGPLRRLEDPQNASFLASISKSECPEELKPATGRAPVHVSLVRKMEDYPVQKHRQPAFVGLGRTLGSTTSSENTTAANPAPATAAPTPFVGLVVDDALPSTSIQLRLADGTRMVSRFNFHHTISNIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLNQTIEEAGLANSVVIQKL 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi16g01986 407 MobiDBLite consensus disorder prediction 184 220 - -
Dapi16g01986 407 SUPERFAMILY Ubiquitin-like 291 405 IPR029071 -
Dapi16g01986 407 MobiDBLite consensus disorder prediction 54 158 - -
Dapi16g01986 407 CDD UBX-UBXN2 335 406 - -
Dapi16g01986 407 FunFam UBX domain-containing protein 1 218 280 - -
Dapi16g01986 407 Pfam SEP domain 223 296 IPR012989 -
Dapi16g01986 407 Gene3D SEP domain 219 280 IPR036241 -
Dapi16g01986 407 FunFam Plant UBX domain-containing protein 4 283 407 - -
Dapi16g01986 407 Gene3D - 283 407 - -
Dapi16g01986 407 PANTHER UBX DOMAIN CONTAINING PROTEIN 13 406 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Dapi16g01986 407 SMART ubx-3 328 407 IPR001012 GO:0005515(InterPro)
Dapi16g01986 407 SUPERFAMILY UBA-like 12 52 IPR009060 GO:0005515(InterPro)
Dapi16g01986 407 ProSiteProfiles UBX domain profile. 329 406 IPR001012 GO:0005515(InterPro)
Dapi16g01986 407 MobiDBLite consensus disorder prediction 298 317 - -
Dapi16g01986 407 MobiDBLite consensus disorder prediction 54 128 - -
Dapi16g01986 407 SMART faf-3 215 308 IPR012989 -
Dapi16g01986 407 MobiDBLite consensus disorder prediction 179 220 - -
Dapi16g01986 407 MobiDBLite consensus disorder prediction 1 23 - -
Dapi16g01986 407 Pfam UBX domain 332 406 IPR001012 GO:0005515(InterPro)
Dapi16g01986 407 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 212 304 IPR036241 -
Dapi16g01986 407 ProSiteProfiles SEP domain profile. 218 282 IPR012989 -
Dapi16g01986 407 Gene3D - 12 53 - -
Dapi16g01986 407 Pfam UBA-like domain 17 54 - -
Dapi16g01986 407 MobiDBLite consensus disorder prediction 298 314 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi16g01986 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:77227952 Dapi14g00019 Dapi-Chr14:494042 transposed
Dapi Dapi-Chr16:77227952 Dapi30g00020 Dapi-Chr30:496642 transposed