AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi16g01987 ATGATTAAGCAAATATTAAACAAACTTCCGAGGAAATCATCCTCCAAATCACATCACAACGATGAACGAAACAACGAATTGGATTTCTCCGTTATTAATTCCAAGGCCAATTCATCGTCTGACAAAACCCCCAAATTGAGTTCTTCCAATAATAATGAAACCCCCAAATTACTACCACCTGCTTCTTATGAAGCATTACCTAGCTTCCGAGGCGTGTCGAGTTCCGAAAAACATAATCTTTTCATCAAAAAGGTGAACATGTGTTGTGTGGTGTTCGATTTCAACGATCCCGCGAAGAACATAAAGGAAAAAGAAGTAAAGAAACAAACTTTACTCGAACTAGTCGATTATGTTTCCTCGGTCACATCGAAATTCAACGAGATTACAATTCAAGAAATCGCGAAAATGGTAGCGTGTAATTTGTTTCGGGCTTTGCCTAATTTGAATCAAGAAAGTAAACTATTGGATGCTTATGATCAAGAAGATGATGAGTTTTGTATGGATCCGTCGTGGCCGCATCTTCAAGTGGTGTATGAGTTCCTTCTTAGGTTTGTGGCTTCGCCCGAAACTAATGCGAAGGTTACTAAACGGTACATTGATCATTCTTTCGTGTTAAAGTTGCTTGATTTGTTTGATTCGGAAGATCAACGGGAACGTGAGTATTTGAAAACAATCTTGCATAGAATATATGGAAAGTTCATGGTTCATCGCCCGTTTATTAGGAAAGCTATTAATAATATCTTTTATCGTTTTATGTTTGAGACGGAGAAACATAATGGGATAGCCCAGTTGCTTGAGGTTTTGGGGAGTATAGTTAATGGGTTTGCTTTGCCTTTGAAGGATGAGCATAAGGCTTTTCTTGTTCATGTGTTGATCCCGCTTCATAAGCCTAGATGTTTGTCGATGTATCACCAGCAGCTTGTGTATTGTGTGTGTCAGTTTGTTGAAAAAGATTGTAAATTGGCGGATACTGTTGTTCGGGGATTGTTAAAGTATTGGCCTGTGACTAATAGTTCGAAAGAGGTTATGTTTCTTGGTGAATTGGAGGAGGTTCTTGAAGTTACACAAGCTGCAGAGTTTGAGAAGTTTATGGCCCCTTTGTTTAGTCGGATCGGTCAATGCCTCAACAGTTCACATTTTCAGGTGGCAGAACGCGCATTGTTTTTGTGGAATAACGAGCATATAAGGAATCTAACAACTCAAAACCGCAAAGCGATTCTGCCTATTATTTTCTCCCCATTGGAGAAAAACACATGCGGTCATTGGAACCAAGCTGTTCAAAGCCTAACCTTAAATGTCAGAAAAGTATTCTCGGATGCCGATCAGTCAACGTTCCAAGAATGTCTGGTCAGGTACCAAGAAGATGAAACCAAAGAGAAAGAAAGCATTACGACAGTCAACATGGGACCGCGTAGATGCCATGGCATTGGCAGCCTCCAAAACCCAGACTATTATCATCACCACCGCTGCCACCGCCACCAAAAAATTATGATTTTGGAAGGTTGGGATAGAAACTAA 1518 40.12 MIKQILNKLPRKSSSKSHHNDERNNELDFSVINSKANSSSDKTPKLSSSNNNETPKLLPPASYEALPSFRGVSSSEKHNLFIKKVNMCCVVFDFNDPAKNIKEKEVKKQTLLELVDYVSSVTSKFNEITIQEIAKMVACNLFRALPNLNQESKLLDAYDQEDDEFCMDPSWPHLQVVYEFLLRFVASPETNAKVTKRYIDHSFVLKLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFMFETEKHNGIAQLLEVLGSIVNGFALPLKDEHKAFLVHVLIPLHKPRCLSMYHQQLVYCVCQFVEKDCKLADTVVRGLLKYWPVTNSSKEVMFLGELEEVLEVTQAAEFEKFMAPLFSRIGQCLNSSHFQVAERALFLWNNEHIRNLTTQNRKAILPIIFSPLEKNTCGHWNQAVQSLTLNVRKVFSDADQSTFQECLVRYQEDETKEKESITTVNMGPRRCHGIGSLQNPDYYHHHRCHRHQKIMILEGWDRN 505
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi16g01987 505 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 462 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Dapi16g01987 505 MobiDBLite consensus disorder prediction 1 59 - -
Dapi16g01987 505 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 66 463 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Dapi16g01987 505 SUPERFAMILY ARM repeat 78 460 IPR016024 -
Dapi16g01987 505 PIRSF PP2A-B56 3 473 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Dapi16g01987 505 Gene3D - 74 467 IPR011989 -
Dapi16g01987 505 MobiDBLite consensus disorder prediction 14 28 - -
Dapi16g01987 505 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 73 473 - -
Dapi16g01987 505 MobiDBLite consensus disorder prediction 29 57 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi16g01987 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:77313680 Dapi31g00763 Dapi-Chr31:14343998 dispersed
Dapi Dapi-Chr12:93673367 Dapi16g01987 Dapi-Chr16:77313680 wgd
Dapi Dapi-Chr16:77313680 Dapi28g01185 Dapi-Chr28:88396892 wgd