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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi16g02068 ATGGCCACTCTATCTCCGGTCACCTTCACGGCGGCAGCCCCCACCACCCGTTCCTCCGGCAGAACCACCACCACCACCACCAAAATAACCTACATCAAAGGCCTCAACTCATTCGGCGGACTTAAAGCCCACAACACCCAGCTGTCTGCCCTCGGAACCCCTCTTTGCACCGAACAGCATTTCGCAAACGTTGTTTCTAAGTTGAACAAACCCTCGTCTCGTGTCGGCGGCGGAGGAGGAGGAGCACTGACCTCCACGTGTAATGCGGTTGGTGAGATATTCAGGATAGCGGCAATCATGAATGGGCTTACGCTTGTTGGAGTTGCAATTGGATTTGTGCTTCTCCGAATTGAAGCGGCAGTTGAAGAATCAGAGTAA 378 53.44 MATLSPVTFTAAAPTTRSSGRTTTTTTKITYIKGLNSFGGLKAHNTQLSALGTPLCTEQHFANVVSKLNKPSSRVGGGGGGALTSTCNAVGEIFRIAAIMNGLTLVGVAIGFVLLRIEAAVEESE 125
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi16g02068 125 Hamap Cytochrome b6-f complex subunit 7 [petM]. 89 121 IPR012595 GO:0009512(InterPro)
Dapi16g02068 125 SUPERFAMILY PetM subunit of the cytochrome b6f complex 90 122 - -
Dapi16g02068 125 Pfam PetM family of cytochrome b6f complex subunit 7 91 118 IPR012595 GO:0009512(InterPro)
Dapi16g02068 125 PANTHER B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED 1 125 IPR053333 -
Dapi16g02068 125 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi16g02068 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
256737 Dapi23g00104 Dapi16g02068
381688 Dapi16g02068 Dapi23g00104
381689 Dapi16g02068 Dapi7g00082
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:81932093 Dapi23g00104 Dapi-Chr23:2149074 wgd
Dapi Dapi-Chr16:81932093 Dapi7g00082 Dapi-Chr7:1551514 wgd