AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01444 ATGGATCAACAGCATATACTCTATGATGAAGTCATAGTGAACGGCGGCAAGACATCATTGACTTTGTCCACCGACGGCACACTGCGGTGGCATGATAACGACGACGCCCTCCGTTGCCTCTCCGTCGACAGAGAAGTTCTCGGAGTATCGGTTATTGGAAACCAGATCATAATTAGGTCATTTATTGAGATTGACGGATCTTGCTTTGGATGTTTTGGAGGAAGTTTGGTACGGAAGAGCTTCCTGTTCGAGGCATCGTCAGAGGATTCATTGCGGAATTTGTGCGACAAGATTCAGGGATACATTGATTCCCTTGCCAGGCCAAAGAAGCTGTTTATATTTGTTAACCCATTTGGAGGTAGGAAGTCTGCTTCCAAGGTTTTTAGCAATGATGTAAAACCTGTACTCGAGGATGCCAATATAGAATATACTTTACAAGAAACTAAATATCAGCTTCATGCTAAGGAAGTTTCTCATAATTTGGATCTTACAAAGTATGATGGCATTCTTTGTGTTAGCGGTGACGGGATATTGGTCGAGGTTGTTAATGGATTGCTTGAAAGAGAAGACTGGCAAGCAGCACTTAAGATGGCTGTTGGTGTTGTACCTGCAGGTACTGGAAATGGAATGATAAAATCTCTTCTCGATTCAGCTGGTCAACCATGTACAGCTGCTCATGCCATGCTTGCTGTTATTCGAGGGCATAAACGCTCTCTGGATGTAGCCACAATCTGGCAAGGGGAGGCTAGATTTTTTAGTGTCTTGATGCTTGCATGGGGATTGATAGCCGATATAGATATTGAGTCTGAGCAGTATCGGTGGATGGGTAGTGCTCGGATGGATTTATATGGTCTACAACGAATTCTAAGACTGCGGAAATATAACGGCTGTATTTCTTTTGTACCTGCTCCTGGATTTGAAGATGTAGGAGAACCAACCAGTGTTGCTGTTGAACCTCTTGAAACTCAGCATCATGGTTACCAGGGCCCTAAGCTTGATTTGGGGAGTTGGAGAAAGCTTAATGGTCCGTTTATTGGTATTTGGCTTCAGAATGTTTCTTGGGGTTCTGAAAATGCCATGGCCGCACCCGATGCTAAGTTTGATGATGGTTATCTAGACTTGATTGTAATGCGAGAATGCCCAAAGTTAAGGTTGATATCCTTGATGTCTGAAATGAGCAATGGGCGTTATGTAAGATCCCCACATGTTTTGTATACTAAGGTGAAGGCAGTGATCTTGGAGCCTGGTTCCAGGACGGGTGACTCAACTATTGAAGGAATTATAGATTCTGATGGGGAAGTCTTGGCAAGAGGCAAAGGAACGTACAAGTGCCACTTAAACTCGTTGATGTGTTATGATAAGCTGCAAATCGTCGTTGATCAAGGGTTGGCTACTTTGTTTACTCCAATTTAA 1413 43.45 MDQQHILYDEVIVNGGKTSLTLSTDGTLRWHDNDDALRCLSVDREVLGVSVIGNQIIIRSFIEIDGSCFGCFGGSLVRKSFLFEASSEDSLRNLCDKIQGYIDSLARPKKLFIFVNPFGGRKSASKVFSNDVKPVLEDANIEYTLQETKYQLHAKEVSHNLDLTKYDGILCVSGDGILVEVVNGLLEREDWQAALKMAVGVVPAGTGNGMIKSLLDSAGQPCTAAHAMLAVIRGHKRSLDVATIWQGEARFFSVLMLAWGLIADIDIESEQYRWMGSARMDLYGLQRILRLRKYNGCISFVPAPGFEDVGEPTSVAVEPLETQHHGYQGPKLDLGSWRKLNGPFIGIWLQNVSWGSENAMAAPDAKFDDGYLDLIVMRECPKLRLISLMSEMSNGRYVRSPHVLYTKVKAVILEPGSRTGDSTIEGIIDSDGEVLARGKGTYKCHLNSLMCYDKLQIVVDQGLATLFTPI 470
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01444 470 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 106 248 IPR001206 GO:0016301(InterPro)
Dapi20g01444 470 Gene3D - 91 239 IPR017438 -
Dapi20g01444 470 SMART dagk-c4a-7 110 245 IPR001206 GO:0016301(InterPro)
Dapi20g01444 470 FunFam Sphingosine kinase 2 94 239 - -
Dapi20g01444 470 Gene3D - 241 451 - -
Dapi20g01444 470 Pfam Diacylglycerol kinase catalytic domain 110 243 IPR001206 GO:0016301(InterPro)
Dapi20g01444 470 Pfam YegS C-terminal NAD kinase beta sandwich-like domain 357 438 IPR045540 -
Dapi20g01444 470 SUPERFAMILY NAD kinase-diacylglycerol kinase-like 107 449 IPR016064 -
Dapi20g01444 470 PANTHER SPHINGOSINE KINASE 76 438 IPR050187 GO:0001727(PANTHER)|GO:0005737(PANTHER)|GO:0006665(PANTHER)|GO:0016020(PANTHER)|GO:0016310(PANTHER)|GO:0043231(PANTHER)|GO:0046512(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01444 K04718 sphingosine kinase [EC:2.7.1.91]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:81832882 Dapi20g01444 Dapi-Chr20:82553583 dispersed
Dapi Dapi-Chr20:82553583 Dapi21g01730 Dapi-Chr21:112477240 dispersed
Dapi Dapi-Chr20:82553583 Dapi4g01538 Dapi-Chr4:91077483 wgd