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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01569 ATGGCTTTAAAGGCTGCGCCCATCTGGGTTTGCTTTAATCACTCGCTTTCTCAATTGGGTTTCTCTGATTCCCTTCAAAACAACAAAAAGATCCAACCTTTCACTAATTATAGGCTTCATTATTCAAAATTCAAGAAATGGGAGTGCTTGGGTTTGAAATTGGCCCACCCTGTTGAAGATGATGAGAAGCCTTTGACTCCACCTGATTTGGGTTCAGATGTCAAGATTCAAGACACCCAGATCACGGAATCCAAAGGCTTTCATAAAGATTTGAATTCTTTGCCGAAACCCTTATCGGCTACGGATCTTGTTTCTTCTGGTAATGATGGCTCAAAGGTCCGAGTTGCTTACCAGGGCTTACCGGGTGCATATAGTGAGGCTGCTGCTCTTAAGGCATACCCAAAATGTGAAACAGTCCCATGTGACCAATTTGAATCTGTATTCAAGGCAGTTGAATTATGGTTGGTGAATAAAGCAGTGCTCCCAATAGAGAACTCTGTAGGGGGGAGCATTCATAGAAATTACGATTTACTCCTTCGTCATCGGCTTCACATTGTTGGTGAAGTTCAGTTAATTGTTGATCACTGCCTCTTGGGTGTCCCGGGAGTAAGAAAAGAGGAGCTAAAGCGCGTTTTAAGCCACCCTCAGGCACTTGAGCAATGTGAGATTGCACTGAACAAATTAGGTGTTGTTAGAGTTAATGCTGAAGATACCGCTCTTGCAGCTCAGATTGTAGCCTCTGAAGGCATACGAGAGACCGGAGCGGTTGCAAGTTCTCGAGCTGCAGAGATATATGGACTTGATATTCTAGCACAAACGATCCAGAATGATTTAGATAACGTTGCACGTTTTCTAATACTAGCAAGAGAACCTATAATCCCGGGAACAGACAAACCCCATAAGACGAGCATTGTCTTTACATTAGAAGAAGGGCCGGGGGTGTTGTTCAAAGCACTAGCCGTGTTCGCTCTAAGGGAGATAAACTTATCAAAGATCGAGAGCCGGCCGCAGAGGAAACGTCCACTCAGGATTGTTGATGACAGCAACAAGGGTAGCGCCAAATACTTTGACTACCTATTTTACATTGACTTTGAAGCTTCGATGGCAGAGCCTCGTGCCCAATATGCACTAGGACATCTACAGGAGTTTGCTAGGTTTCTTCGTGTTCTTGGCTGCTACCCGATGGACACGACTCTATAG 1200 44.58 MALKAAPIWVCFNHSLSQLGFSDSLQNNKKIQPFTNYRLHYSKFKKWECLGLKLAHPVEDDEKPLTPPDLGSDVKIQDTQITESKGFHKDLNSLPKPLSATDLVSSGNDGSKVRVAYQGLPGAYSEAAALKAYPKCETVPCDQFESVFKAVELWLVNKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLIVDHCLLGVPGVRKEELKRVLSHPQALEQCEIALNKLGVVRVNAEDTALAAQIVASEGIRETGAVASSRAAEIYGLDILAQTIQNDLDNVARFLILAREPIIPGTDKPHKTSIVFTLEEGPGVLFKALAVFALREINLSKIESRPQRKRPLRIVDDSNKGSAKYFDYLFYIDFEASMAEPRAQYALGHLQEFARFLRVLGCYPMDTTL 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01569 399 ProSitePatterns Prephenate dehydratase signature 2. 329 336 IPR018528 GO:0004664(InterPro)|GO:0009094(InterPro)
Dapi20g01569 399 FunFam Arogenate dehydratase 296 397 - -
Dapi20g01569 399 CDD PBP2-Ct-PDT-like 112 291 - -
Dapi20g01569 399 Pfam Prephenate dehydratase 115 290 IPR001086 GO:0004664(InterPro)|GO:0009094(InterPro)
Dapi20g01569 399 ProSiteProfiles ACT domain profile. 303 394 IPR002912 -
Dapi20g01569 399 FunFam Arogenate dehydratase 109 196 - -
Dapi20g01569 399 Gene3D - 108 196 - -
Dapi20g01569 399 CDD ACT-CM-PDT 301 394 - -
Dapi20g01569 399 SUPERFAMILY ACT-like 284 395 IPR045865 -
Dapi20g01569 399 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 73 398 - GO:0004664(PANTHER)|GO:0005737(PANTHER)|GO:0009094(PANTHER)|GO:0009507(PANTHER)|GO:0047769(PANTHER)
Dapi20g01569 399 FunFam Arogenate dehydratase 197 277 - -
Dapi20g01569 399 Gene3D - 296 397 - -
Dapi20g01569 399 Gene3D - 197 277 - -
Dapi20g01569 399 SUPERFAMILY Periplasmic binding protein-like II 114 295 - -
Dapi20g01569 399 ProSiteProfiles Prephenate dehydratase domain profile. 114 289 IPR001086 GO:0004664(InterPro)|GO:0009094(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01569 K05359 arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
260180 Dapi20g01569 Dapi4g01646
264783 Dapi4g01646 Dapi20g01569
385465 Dapi20g01569 Dapi4g01646
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:93357087 Dapi21g00759 Dapi-Chr21:25238318 dispersed
Dapi Dapi-Chr14:844407 Dapi20g01569 Dapi-Chr20:93357087 wgd
Dapi Dapi-Chr20:93357087 Dapi30g00035 Dapi-Chr30:847007 wgd
Dapi Dapi-Chr20:93357087 Dapi4g01646 Dapi-Chr4:101813510 wgd