AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01575 ATGGGACACTATCAAAAAGGAATTGCAATTTTCCTCATTTGTTCATCATTTTTGTATCCTCCCTTAACCCTTTCTGATTCAACTAAAGGATACATTAAAATCAAACTAAAAAAACTGAAACTGGATCATGCGAGTCGTGTTCTGTCACTTTCCGAGCCCAGTCATTCTGTCAAGGCGCGTGGTGAAAATAGTCCTAACGGGCCACAGGGCTCGGATATCGTGTTTTTAAAGAACTACAGGGACACTCAATACTATGGTGAGATTAGCATTGGCAACCCACCTCAGAAGTTCACTGTAGTTTATGACACCGGTAGCTCTAATCTATGGGTGCCATCATCAAAATGTTTTTTCTCGATTTCTTGCTATGTTCATCCAAAATACAGTTCAAGAATGTCAAACACATACAAGGGAAATGGGAAATATGCTGCAATTGGATATGGAAGTGGCTCAATATCTGGATTCTTAAGCAAAGACGATGTCAAAGTAGGCGATTTGGTTATTAAAGAACAGGAGTTCATCGAGGCGACAACAGAGCCTGGAGTCGTATTTATGACCGGAAAGTTCGACGGTATACTTGGACTTGGGTTCAAAGAGATTTCTGTAGGAAATGTTACCCCAGTATGGGACAATATGGTTGATCAAGGTCTAGTTAAAGATCCGGTGTTCACTTTTTGGTTGAACCGTGATGCCAATGAAGAAAAAGGTGGTGAAATTGTTTTTGGAGGTGTTGATCCTGATCATTACACCGGCAATCATACTTATGTTCCGGTCACACAAAAGGGTTACTGGCAGTTCGATTTGGGCGATGTTCTTATCAATGGAAAATCTACCGGATATTGTCAAAACGGATGTTCCGCGATTGCAGACTCGGGAACTTCACTAATAACCGGCCCACCATCTATGATCACCGAGATAAATAACGCGATTGGAGCCAAGACCTTTTCGAGTCAGTTGCAATCCAAATCTGAAGAGCTCTCTGATAGTTCTCCGGGAACAATGGAAGTCTCGAGTGTTGATTGTGCAAACATTTCCTCCATGCCGAATATATCATTTATGATCGGTGGTAACGAATTTGTTTTTTCACCTCATGAGTACATTGTTAAAGATGGTGCTGGTGAGTGTGTTAGCGGCTTCATGCCACTCGATATTCCTCCTCCTCATGGCCCTCTGTGGATCTTTGGAGATGTTTTCATGGGCGCTTACCACACCATATTCGATTATGGAAATCTAAAAGTTGGATTCGCTAAGGCCGCGTAG 1257 42.16 MGHYQKGIAIFLICSSFLYPPLTLSDSTKGYIKIKLKKLKLDHASRVLSLSEPSHSVKARGENSPNGPQGSDIVFLKNYRDTQYYGEISIGNPPQKFTVVYDTGSSNLWVPSSKCFFSISCYVHPKYSSRMSNTYKGNGKYAAIGYGSGSISGFLSKDDVKVGDLVIKEQEFIEATTEPGVVFMTGKFDGILGLGFKEISVGNVTPVWDNMVDQGLVKDPVFTFWLNRDANEEKGGEIVFGGVDPDHYTGNHTYVPVTQKGYWQFDLGDVLINGKSTGYCQNGCSAIADSGTSLITGPPSMITEINNAIGAKTFSSQLQSKSEELSDSSPGTMEVSSVDCANISSMPNISFMIGGNEFVFSPHEYIVKDGAGECVSGFMPLDIPPPHGPLWIFGDVFMGAYHTIFDYGNLKVGFAKAA 418
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01575 418 Pfam Eukaryotic aspartyl protease 83 417 IPR033121 -
Dapi20g01575 418 PRINTS Pepsin (A1) aspartic protease family signature 391 406 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Dapi20g01575 418 PRINTS Pepsin (A1) aspartic protease family signature 286 297 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Dapi20g01575 418 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Dapi20g01575 418 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Dapi20g01575 418 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 27 417 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Dapi20g01575 418 SUPERFAMILY Acid proteases 14 417 IPR021109 -
Dapi20g01575 418 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Dapi20g01575 418 FunFam Aspartic proteinase A1 32 242 - -
Dapi20g01575 418 Gene3D Acid Proteases 32 242 IPR021109 -
Dapi20g01575 418 Gene3D Acid Proteases 244 417 IPR021109 -
Dapi20g01575 418 ProSiteProfiles Peptidase family A1 domain profile. 84 415 IPR033121 -
Dapi20g01575 418 FunFam Vacuolar aspartic proteinase 244 417 - -
Dapi20g01575 418 MobiDBLite consensus disorder prediction 52 71 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01575 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
78266 Dapi20g01575 Dapi21g01669
78267 Dapi20g01575 Dapi5g01525
260182 Dapi20g01575 Dapi4g01648
264785 Dapi4g01648 Dapi20g01575
385468 Dapi20g01575 Dapi4g01648
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:93549192 Dapi23g00193 Dapi-Chr23:3982337 dispersed
Dapi Dapi-Chr20:93549192 Dapi21g01669 Dapi-Chr21:110307142 wgd
Dapi Dapi-Chr20:93549192 Dapi4g01648 Dapi-Chr4:101972332 wgd
Dapi Dapi-Chr20:93549192 Dapi5g01525 Dapi-Chr5:104413844 wgd