AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01729 ATGGGCAACTACAGGTTCCGATTCTCATGGTTCTACACTTCCAATAACAAAATAACCAAAACCCAACCCATCACAACTTCATCATCATCATCGTCAGTATCATCTTTCCCATTATCATCGCAACCCGCAATTAACCACAGAAAATCCTATTATTTCACAAGAGACCTAACCGACCCGACCCGTATTCATTCCCCACCGCCGGAGACCAACCTACCAGACCCAAAAAGGAAGTCAACCAAGAAAAAAAAACCCATTTCCCCGAAAATACGAATTCGCCGGAAATTGAAGTCGCCGGAGCTCAATCCCGCTGCCGTGTGCGGCTGCCGGACCACGCCGGAGTCCAGTTTGACGTCGCCGGAGCAATCCGTTTACGAAAAAGTTGACCTCCCGCCGATTATTACAAAACCGGGTAAACAAAACGAATTCGGGTCGGGTAAAGAAAACGAATTCGGGTCGGGTAAATGGGTGATTGACGGAGGAAACCGGAGTTTATCGGTGCGGGTTGTGAAGGAGGGTATTATTGGAAGTCCGGTAGGAAAAGTTAAAGGAAACAGTTACTCGCCGAGGTTAGGGAATCGGGTTAAGGTTAACGGGATTAACGGTGGTCGGAGGAGAACCGGGAACCGGCGGAGTTTGTCGGAGAGTTTGGCGGTTGTGAAAACGTCGGTGGATCCGGGGAGAGATTTTAAGGAATCTATGGTTGAGATGATAATGGAGAATAATATTAAGAGTTCGAAAGATTTGGAAGATCTTCTTGCATGTTATCTTGCATTGAATTCCGATGAGTATCATGACTTGATTATTAAGGTATTCAAGCAAATTTGGTTTGAGAGTAGTGATATTAGGTTGTAG 852 45.89 MGNYRFRFSWFYTSNNKITKTQPITTSSSSSSVSSFPLSSQPAINHRKSYYFTRDLTDPTRIHSPPPETNLPDPKRKSTKKKKPISPKIRIRRKLKSPELNPAAVCGCRTTPESSLTSPEQSVYEKVDLPPIITKPGKQNEFGSGKENEFGSGKWVIDGGNRSLSVRVVKEGIIGSPVGKVKGNSYSPRLGNRVKVNGINGGRRRTGNRRSLSESLAVVKTSVDPGRDFKESMVEMIMENNIKSSKDLEDLLACYLALNSDEYHDLIIKVFKQIWFESSDIRL 283
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01729 283 Pfam Transcriptional repressor, ovate 222 277 IPR006458 -
Dapi20g01729 283 ProSiteProfiles OVATE domain profile. 218 277 IPR006458 -
Dapi20g01729 283 MobiDBLite consensus disorder prediction 21 40 - -
Dapi20g01729 283 MobiDBLite consensus disorder prediction 56 89 - -
Dapi20g01729 283 NCBIfam uncharacterized plant-specific domain TIGR01568 217 276 IPR006458 -
Dapi20g01729 283 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 29 277 IPR038933 GO:0045892(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01729 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
260241 Dapi20g01729 Dapi4g01793
264844 Dapi4g01793 Dapi20g01729
385539 Dapi20g01729 Dapi4g01793
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1912581 Dapi Dapi20g01729 Dapi-Chr20:104905528 Dapi27g00580 Dapi-Chr27:12042714
2026243 Dapi Dapi20g01729 Dapi-Chr20:104905528 Dapi4g01793 Dapi-Chr4:113694851
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi Ovate 9.3e-24 No_clan TF OFP