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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01740 ATGACTGCTTTGATGATGGCCTTCAAGCTGTTCTCTGTCTCATCCTCTGTTCCTGCACACTCGTCAATTTCATTTCCTTCAACAACGAAATCCTTGCTTCCTTTGAAGTTTTCTCCACGCCGTTCTACTTTCCCAAGAATTTATGCCTTTTCTAGTAATGATATCAAGGTGGGTTCCAACATTGAGGTAGATGGTGCTCCTTGGAAAGTTCTAGAGTTTCTTCATGTGAAGCCTGGTAAAGGGGCTGCTTATGTGAGGACTACACTACGGAATCATATTACAGGAAACTCTGTTGAGAAAACCTTCCGGGCTGGAAGCAAGATTGAACAAGCTGAGATCTCCAAGGAGACGAAACAATTCACATACAAGGACGGTTCACAGTTTGTTTTCATGGATCTGTCTTCATACGAGGAAGTTCGTCTTAATGAGTCAGACATGGGCGATAAGACTAAATGGCTAAAAGAAGGCATGGATTGCATTTTGCTATTTTGGAAGGGAAAGGTTATCGATTTTGAGCTCCCGATACAAGTTAAAGTGAAAATAGTTGAAGTTGATCCTGGTGTGAAAGGTGACGCGGCTCAAGGTGGATCAAAGCCAGCGACTGTGGAAACCGGTGCTGTTGTTTATGTTCCTTTGTTTGTAGACAGAGATCAAGAAATTATTGTGGATACAAGAACAGGGCAGTATTTTGCTGTGAGAGTTCTGCTATACATGTAA 717 42.26 MTALMMAFKLFSVSSSVPAHSSISFPSTTKSLLPLKFSPRRSTFPRIYAFSSNDIKVGSNIEVDGAPWKVLEFLHVKPGKGAAYVRTTLRNHITGNSVEKTFRAGSKIEQAEISKETKQFTYKDGSQFVFMDLSSYEEVRLNESDMGDKTKWLKEGMDCILLFWKGKVIDFELPIQVKVKIVEVDPGVKGDAAQGGSKPATVETGAVVYVPLFVDRDQEIIVDTRTGQYFAVRVLLYM 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01740 238 Pfam Elongation factor P (EF-P) KOW-like domain 51 108 IPR013185 -
Dapi20g01740 238 NCBIfam elongation factor P 51 230 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Dapi20g01740 238 FunFam Organellar elongation factor P 43 111 - -
Dapi20g01740 238 Gene3D - 43 111 IPR014722 -
Dapi20g01740 238 SUPERFAMILY Nucleic acid-binding proteins 113 177 IPR012340 -
Dapi20g01740 238 Pfam Elongation factor P, C-terminal 177 230 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Dapi20g01740 238 Gene3D - 112 174 IPR012340 -
Dapi20g01740 238 FunFam Elongation factor P 112 175 - -
Dapi20g01740 238 SUPERFAMILY Nucleic acid-binding proteins 177 230 IPR012340 -
Dapi20g01740 238 CDD S1-EF-P-repeat-2 177 229 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Dapi20g01740 238 ProSitePatterns Elongation factor P signature. 198 217 IPR013852 -
Dapi20g01740 238 Gene3D - 176 231 IPR012340 -
Dapi20g01740 238 SUPERFAMILY Translation proteins SH3-like domain 46 109 IPR008991 -
Dapi20g01740 238 CDD S1-EF-P-repeat-1 119 174 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Dapi20g01740 238 Pfam Elongation factor P (EF-P) OB domain 119 169 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Dapi20g01740 238 SMART EFP-2 115 169 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Dapi20g01740 238 FunFam Elongation factor P 176 234 - -
Dapi20g01740 238 PANTHER ELONGATION FACTOR P 30 230 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Dapi20g01740 238 SMART Elong-fact-P-C-2 177 232 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Dapi20g01740 238 Hamap Elongation factor P [efp]. 49 234 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01740 K02356 elongation factor P
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Event-related genes

Select Gene_1 Gene_2 Event_name
260244 Dapi20g01740 Dapi4g01803
264847 Dapi4g01803 Dapi20g01740
385542 Dapi20g01740 Dapi31g02035
385543 Dapi20g01740 Dapi4g01803
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2024849 Dapi Dapi20g01740 Dapi-Chr20:105710558 Dapi31g02035 Dapi-Chr31:100848853
2026250 Dapi Dapi20g01740 Dapi-Chr20:105710558 Dapi4g01803 Dapi-Chr4:114506212