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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01802 ATGGAAACGGAACAGAAACCGGTAATGATCGTCGGAATCGATGACAGCGATCACAGTTTTTACGCACTGGAATGGACTTTGGATCACTTTCTAGCACCTTCCGCTCCGAATCCTCCGTTCAAGTTAATCGTTGTTCACTCGAAGCCTTCTCCGACTTCCGCGATCGGTTTCGCCGGTCCTGGTGCAGCGGATGTTTATCCGTTTGTGGATTCGGATTTGAAGAAGATCGCTGCTCGAGTGGTGGAGAGAGCGAAGGAGCTTTGTCATTCGAAATCGGTGGACGATGTGAAGGTTGAAGTTGTGGAAGGCGATGCCAGGAATGTTCTATGTGAAGCTGTAGAGAGGCACCATGCTACCATGCTGGTAGTCGGTAGCCATGGTTATGGAGCTATTAAAAGGGCAGTTTTGGGGAGTGTAAGTGACTATGTTACTCATCATGCCCACTGCACCGTGATGATTGTGAAGAAGCCAAAGACCAAACACTCGGCTTAG 492 49.19 METEQKPVMIVGIDDSDHSFYALEWTLDHFLAPSAPNPPFKLIVVHSKPSPTSAIGFAGPGAADVYPFVDSDLKKIAARVVERAKELCHSKSVDDVKVEVVEGDARNVLCEAVERHHATMLVVGSHGYGAIKRAVLGSVSDYVTHHAHCTVMIVKKPKTKHSA 163
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01802 163 Gene3D HUPs 3 163 IPR014729 -
Dapi20g01802 163 CDD USP-Like 9 154 - -
Dapi20g01802 163 PRINTS Universal stress protein signature 133 155 IPR006015 -
Dapi20g01802 163 PRINTS Universal stress protein signature 6 24 IPR006015 -
Dapi20g01802 163 PRINTS Universal stress protein signature 115 127 IPR006015 -
Dapi20g01802 163 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 157 - -
Dapi20g01802 163 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 159 - -
Dapi20g01802 163 Pfam Universal stress protein family 9 155 IPR006016 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01802 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
73032 Dapi11g00238 Dapi20g01802
78290 Dapi20g01802 Dapi27g00232
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr15:101579687 Dapi20g01802 Dapi-Chr20:107349930 dispersed
Dapi Dapi-Chr20:107349930 Dapi4g00316 Dapi-Chr4:7421974 dispersed
Dapi Dapi-Chr20:107349930 Dapi11g00238 Dapi-Chr11:3899779 transposed
Dapi Dapi-Chr20:107349930 Dapi27g00232 Dapi-Chr27:4219513 transposed