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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01810 ATGGCCAATTCCACCACTCTTCTTATTATTATTCTCCTCATCTCCGCCGTCATTTTACCTCCGGCCACCGCCGGAGTCGCCGATTTCAACTGGCTGCAGACACGAGGAACAGAGTGCAGCGGCTCGATCGCCGAGTGTATGGCCGGGGGAGAGCTGGAGATGGAATCGGAGAGCACTAGGCGCATATTAGCAACGACGAAGTACATCAGCTATGGTGCGCTGCAAGGGAACAATGTGCCGTGCTCGCAGAGAGGTGCGTCGTATTATAACTGCCGATCTGGTGGTCAAGCTAATCCGTACCAGCGTGGTTGCAGTACTATTACTCGTTGCCGACGCTGA 339 54.57 MANSTTLLIIILLISAVILPPATAGVADFNWLQTRGTECSGSIAECMAGGELEMESESTRRILATTKYISYGALQGNNVPCSQRGASYYNCRSGGQANPYQRGCSTITRCRR 112
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01810 112 PANTHER RAPID ALKALINIZATION FACTOR-LIKE 6 112 - GO:0009506(PANTHER)|GO:0019722(PANTHER)
Dapi20g01810 112 Pfam Rapid ALkalinization Factor (RALF) 51 112 IPR008801 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01810 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
75266 Dapi16g00022 Dapi20g01810
78291 Dapi20g01810 Dapi32g00019
78292 Dapi20g01810 Dapi7g02565
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr12:97586077 Dapi20g01810 Dapi-Chr20:107648065 dispersed
Dapi Dapi-Chr12:104074695 Dapi20g01810 Dapi-Chr20:107648065 dispersed
Dapi Dapi-Chr16:521794 Dapi20g01810 Dapi-Chr20:107648065 dispersed
Dapi Dapi-Chr16:63805874 Dapi20g01810 Dapi-Chr20:107648065 dispersed
Dapi Dapi-Chr17:19867465 Dapi20g01810 Dapi-Chr20:107648065 dispersed
Dapi Dapi-Chr1:19979322 Dapi20g01810 Dapi-Chr20:107648065 dispersed
Dapi Dapi-Chr20:107648065 Dapi32g00019 Dapi-Chr32:346247 dispersed
Dapi Dapi-Chr20:107648065 Dapi7g02565 Dapi-Chr7:111427749 wgd