AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01842 ATGCAACATGATTTAGTTGTAATTATCAAGAAACTTCATATGTTAAGTTCAAATGGTCTTGGCATGCTAATAAGAGATGCTGAAAATGGCATTATGAAATGGACTGAAACAACTGAAACAACTGAAACATTTGAGATAAATGTGGAAAGTCTTGCAAGAAATCTACTCAACCACATAATGGAACTTCTGCTATCACTCAAACAAGATGAGCAGCATTTTAGTTATCTATTAGGTGGTTTAAGGCTGTTGCATACTCTTTTCGATATTTCAGCGCACCATTTAACACTCGCGCGGGTTTTAGTTGAAGACACAAATGTACGAAAAGAGACGATTAATTCGATATTCGACATGATTATTGTCCTTAGACAGTTAGGAGAGAAAATTGATGGTTCAGGCCAAATGGGCCTTTTGTACTCTGCATTATTGTCTAGCAGTTTGTATCTGCTTAAAGCCTTAATTTCTTCAGACTGGGGGGTCGTCTCGCCTACTCTAAAGGCACATTCTAAGGTTGATGAATTCGCTATATCAGCTTTTACTGCTGTTCGTGTGGTTGTTGAATTTCTTCAAGCGAAGCTGCCAGCTCAGCGTAGTGACTCTCGCACGAGGTCAAATGTTAACGAAGTCTACTGTCTCTCCCATCTTTGTGAATCTTCTATACAGTTTCTTCAATCATTGTGCGAACAGTTGTTGTTTCGGGAGCGCCTAGTTCAGAATAAGGAGCTATGTAGGGGAGGTGCTGTTCTTCAGTTGGTTCTAACAACCTTAAAACTATCGCGATGTGAAGATCCATATCTTACGGGTGTGGTTTATAGGCTTAAATCCAAAGTTTTAGCAATTACGCTACATCTTTGTGAAGCGAAGAGCGCGTCTTTCTTGGATATGGCTACCAGCACCCGTCAAGGCATGGAGTTAGTTATGCCAACTGTTTTTGAGGTCCTTGGAGTGGTAAAGATTATGTTTTTTGGAGATATGAAAGACAACCCAAGGGGAATTTTGCAAGTAAATGCAATGAAATTACTAGAAATATTCTCTGGTTATTCAAGACTCAGAAGTTTCATAGTCTCAAACTTGACTGAAGTTTTGATCCGGTTGTTTTCGCAACCTCAAAGCGAATTCTTGTCTACTTGGTGTTCCTATGACCATGAGCTGGTCGAAGAGGACACTGTTATCGATTTTGACGCCATGTCAGCAGCGGGCCAGGTGTTGGGTTTCATCTCAACATTAAATATCTGGCAGTATAGTTGGAACAACTTTCAAGATCAAGTTCCTTACGCATACCGGAGATCGTCCTTACTTGTAAAAGTTCTAGCGAATCTGTCATGTGTTATTCCCCATCTGTGTGAAGAGGAGAATGCTCTCTTTATCAACGAGTTTCTCGAGTGCTTGCAAACGGCTAACTTACCTGGCGGTGCTGCTCAAAGAACAGCCAACGCTAGCAGAAACCTATCTTCCTTGTTAGCTCATGCTGAAACTTTGACTTCTGCATTGCTACATGTAGAATATGTGGAAGCCCTGAGGTGGTTTGTTAGAAAACTGGAGCAGTTACTTGAGGCTCAAGAATCAGATATCTATAGAGTTATGGAGGTTCACAACAACACCCAATGCCCATCACCTACACCTCAAAGCCCATCTCCAAATGAAGATGATAACGATCTCACAGGCGGAGTTTTAACAATCTACTGTCCCAACCCAACTCGAAAGACCCCCACAAATGTTTTAAAGCGCTAG 1728 41.2 MQHDLVVIIKKLHMLSSNGLGMLIRDAENGIMKWTETTETTETFEINVESLARNLLNHIMELLLSLKQDEQHFSYLLGGLRLLHTLFDISAHHLTLARVLVEDTNVRKETINSIFDMIIVLRQLGEKIDGSGQMGLLYSALLSSSLYLLKALISSDWGVVSPTLKAHSKVDEFAISAFTAVRVVVEFLQAKLPAQRSDSRTRSNVNEVYCLSHLCESSIQFLQSLCEQLLFRERLVQNKELCRGGAVLQLVLTTLKLSRCEDPYLTGVVYRLKSKVLAITLHLCEAKSASFLDMATSTRQGMELVMPTVFEVLGVVKIMFFGDMKDNPRGILQVNAMKLLEIFSGYSRLRSFIVSNLTEVLIRLFSQPQSEFLSTWCSYDHELVEEDTVIDFDAMSAAGQVLGFISTLNIWQYSWNNFQDQVPYAYRRSSLLVKVLANLSCVIPHLCEEENALFINEFLECLQTANLPGGAAQRTANASRNLSSLLAHAETLTSALLHVEYVEALRWFVRKLEQLLEAQESDIYRVMEVHNNTQCPSPTPQSPSPNEDDNDLTGGVLTIYCPNPTRKTPTNVLKR 575
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01842 575 PANTHER NODULIN HOMEOBOX 3 546 IPR039325 GO:0003697(InterPro)|GO:0009908(InterPro)
Dapi20g01842 575 MobiDBLite consensus disorder prediction 531 575 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01842 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
75263 Dapi16g00016 Dapi20g01842
78303 Dapi20g01842 Dapi32g00012
78304 Dapi20g01842 Dapi7g02546
260283 Dapi20g01842 Dapi4g01892
264886 Dapi4g01892 Dapi20g01842
385595 Dapi20g01842 Dapi4g01892
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:391618 Dapi20g01842 Dapi-Chr20:108789850 dispersed
Dapi Dapi-Chr20:108789850 Dapi32g00012 Dapi-Chr32:216278 dispersed
Dapi Dapi-Chr20:108789850 Dapi20g01846 Dapi-Chr20:108997831 proximal
Dapi Dapi-Chr20:108789850 Dapi4g01892 Dapi-Chr4:117023280 wgd
Dapi Dapi-Chr20:108789850 Dapi7g02546 Dapi-Chr7:111153286 wgd