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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01850 ATGGCGAAAAAGCTAGTGAAATACTCCATAGTGAATGCATTTGCGGACACTGCATTTAAAGGAAATCCGGCGGTTATTGAGCTTTGTGGTCATGCAACTTTAGCAGCCGCACACTTTGTTTTCCGGTCTGGATTGGTGAATTCTAACATAATTGAATTCTCAACGATATCTGGAATGTTAACTGCCAAACGAATTCCGGATAATACAGTCAATGGTGAATTAGAAGACAGGTTCTACATAGAATTGGATTTCCCTTTGGTGCCGGTTTCAGATTTGAATGATGTTGAGGTTTCTGCAATTTCGGAAATGTTAAATGGTGTTTCTGTTGTTGATGTTCCAAAGAAGAGTGCAATTGATGACATCATTGTGGTGTTTTCATCACGAGAAGAAGTTGATTCTGTTTGTGGGAGTGCACATTGCGCCTTAGCAGCCTATTGGCATGAGAAGTTGGGGAAATGCAATTTTGTTGCATATCAGGCATCGCGTAGAAGTGGCGTATTACATATCCATATCGATAAGCAACATCAAAGAGTACTTCTTCGAGGTAAAGCCACCACAATCATGGAAGGGTCTCTTTTGGTCTAA 585 40.68 MAKKLVKYSIVNAFADTAFKGNPAVIELCGHATLAAAHFVFRSGLVNSNIIEFSTISGMLTAKRIPDNTVNGELEDRFYIELDFPLVPVSDLNDVEVSAISEMLNGVSVVDVPKKSAIDDIIVVFSSREEVDSVCGSAHCALAAYWHEKLGKCNFVAYQASRRSGVLHIHIDKQHQRVLLRGKATTIMEGSLLV 194
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01850 194 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 25 97 - -
Dapi20g01850 194 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 98 182 - -
Dapi20g01850 194 SUPERFAMILY Diaminopimelate epimerase-like 7 193 - -
Dapi20g01850 194 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 26 132 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Dapi20g01850 194 Pfam Phenazine biosynthesis-like protein 26 131 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Dapi20g01850 194 Pfam Phenazine biosynthesis-like protein 132 190 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01850 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260289 Dapi20g01850 Dapi4g01902
264892 Dapi4g01902 Dapi20g01850
385602 Dapi20g01850 Dapi4g01902
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:109173629 Dapi20g01850 Dapi-Chr20:109202673 dispersed
Dapi Dapi-Chr20:109202673 Dapi4g01903 Dapi-Chr4:117482678 dispersed
Dapi Dapi-Chr20:109195550 Dapi20g01850 Dapi-Chr20:109202673 tandem
Dapi Dapi-Chr20:109202673 Dapi20g01851 Dapi-Chr20:109299004 tandem