AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01851 ATGGCGAAGAAGCTCGTGAAATACTCCGTAGTGGACGCCTTTACAGACACGGCGTTTAAAGGAAATCCGGCGGCTGTGTGTTTGTTAGAGGACATAGAGAAAGATGATAAGTGGTTGCAATCAGTTGCAACTGAATTCAATATTTCAGAGACGTGTTACTTGACTCCGATTGTCAATCACGGTTCAGGAAACCCTAGATTCAGTCTCAGATGGTTCACTCCTGTAGCTGAGGTGGAGCTTTGTGGTCATGCAACTTTAGCAGCCTCCCACTTTCTTTTCCAGTCTGGCTTGGTGACTTCTAACACAATTGAATTCTCAACCCTTTCTGGAATTTTGACCGCCAAAAAAATTCCAGCTAACAAGATTAACGGCTCGTCAAATGGTGAATCGCAAGACAGCTTCTACATTGAATTGGATTTCCCTGTTGTGCCGGTTTCAGACTACAATGATCTTGAAGTTTCTGCAGTTTCAAAAATATTAAACGGTGCTTCTGTTGTTGATGTAAAGACGAACACGCTTGATGATATCTATGTGGAGCTTTCATCAGCAGAAGAACTTGTGGAATTCAAGCCCCAACTTAACAAGATTAAAGAATCCCCGGGCAGAGGGATAGTAATTACAGCACGTGCACCTAACGGATCGGGGTTTGACTTTTATAGTCGCTTCTTCTGCCCAAAATTAGGAATTGATGAGGATCCTGTTTGTGGGAGCGCACATTGCGCGTTAGCAGCCTATTGGCACGAGAAGTTGGGGAAATGTGATTTTGTTGCATATCAGGCGTCACCTAGAAGTGGCGTATTACATGTCCATCTTGATAAGGAGAATCAAAGAGTACTTCTTCGAGGTAAAGCCACCACAGTCATGGAAGGGTCTCTTTTGGTCTAA 885 43.73 MAKKLVKYSVVDAFTDTAFKGNPAAVCLLEDIEKDDKWLQSVATEFNISETCYLTPIVNHGSGNPRFSLRWFTPVAEVELCGHATLAASHFLFQSGLVTSNTIEFSTLSGILTAKKIPANKINGSSNGESQDSFYIELDFPVVPVSDYNDLEVSAVSKILNGASVVDVKTNTLDDIYVELSSAEELVEFKPQLNKIKESPGRGIVITARAPNGSGFDFYSRFFCPKLGIDEDPVCGSAHCALAAYWHEKLGKCDFVAYQASPRSGVLHVHLDKENQRVLLRGKATTVMEGSLLV 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01851 294 SUPERFAMILY Diaminopimelate epimerase-like 7 293 - -
Dapi20g01851 294 PIRSF Ismrse-PhzF 4 294 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Dapi20g01851 294 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 290 - -
Dapi20g01851 294 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 294 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Dapi20g01851 294 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 142 282 - -
Dapi20g01851 294 Pfam Phenazine biosynthesis-like protein 11 290 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Dapi20g01851 294 NCBIfam PhzF family phenazine biosynthesis isomerase 8 292 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01851 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Event-related genes

Select Gene_1 Gene_2 Event_name
260290 Dapi20g01851 Dapi4g01903
264893 Dapi4g01903 Dapi20g01851
385603 Dapi20g01851 Dapi4g01903
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:109195550 Dapi20g01851 Dapi-Chr20:109299004 dispersed
Dapi Dapi-Chr20:109299004 Dapi4g01903 Dapi-Chr4:117482678 dispersed
Dapi Dapi-Chr20:109202673 Dapi20g01851 Dapi-Chr20:109299004 tandem