AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dapi20g01859 | ATGGGCAGGCCATGTATAGAATCCTCGTCGTCATCTCCACCGCTGCTGATGACATCAACATCGATCACCGAAACTGTGAACGGCGAGCATGATTTCAGGATTTCCGGTTATTCGCTTTGTAAGGGTACTGGAATAGGGAAATATATAGCGTCTGATACGTTTACGGTTGGGGGGTATTCATGGGCGATATATTTTTACCCTGATGGGAAGAGTTTGGAGGATAACGCCAGTTATGTCTCCTTGTTTATTGCTTTGGCTAGTGATGGATCTGATGTCAGAGCGTTGTTTGAGTTGACTTTAATTGACCAAAGTGGGAAGGAGAGACATAAAGTTCATAGTCATTTTGGTAGAGCATTGGAGAGTGGACCTTATACTCTTAAATACAGGGGTAGTATGTGGGGATACAAGCGGTTTTTCAAAAGATCTACTTTGGAAACATCAGACTACCTTAAAGACGACTGCCTTCAAGTTCACTGCTGCGTTGGTGTAGTCAGGTCCCACACAGAGGGTCCTAAGTCCTACTCTATCCACGTGCCCCCTTCTGATATCGGGCAGCATTTCGGGCAGCTTCTGGAATGCAGAAAGGGGACTGACGTTTCTTTTGAAGTAAATGGGGAAACCTTTGCTGCCCATAAATTGGTTCTTGCCGCCCGCTCACCTGTTTTCAGGGCTCAACTTTTTGGCCCAATGAGAGATCAAAATGTGCATTGTATCAAAGTTGAAGACATAGAAGCCCCTGTTTTTAAGGCACTACTTCATTTTATATACTGGGACAAACTGCCCGACATGGAAGAGCTAACGGGCCTGAATACAAAATGGGCTTCAACGTTGATGTATCAGCATTTGCTTGCAGCTGCTGACCGATATGGGTTAGAGAGGCTTTGTATGTTATGTGAATCCAATCTTTGTGAAGATGTTGCCATTAATACAGTTGCAACAACATTAGCGTTGGCTGAACAGCACCATTGTGTCCAGTTAAAATCCGTGTGTCTTAAGTTCGTTTCTTTGCCTGAGAATCTCAGAGCTGTGATGCAGACAGAAGGGTTTGACTACTTAAAAGAAAGCTGTCCGCACGTGTTGACCGATCTACTGGAACACGTTGCTAGAAACAACGAGCATTCTCTAGCCATTTGCAGTCACCCAAATGCAATAATACTGGATGGAAGTGATGTTCATGGTAGACGGTTGTTCTTCTCATACTTCAAGGATTTGGTTGGAAGAGAAGTGACCGTGGAACTGAAGAACGATTTAGCAATACGCGGAACTCTTCATTCCGTCGATCAGTATCTCAATATCAAACTCGAGAACACCAGAGTCGTTGATCAGGACAAGTTTCCTCACATGCTTTCGGTGAGGAACTGTTTCATCAGAGGATCAGTAGTGAGGTATGTGCAGTTACCACCAGATGGAGTCGACATCGAGCTGCTCCATGATGCCACTAGAAGAGAAGCCCGAGGCGGGTAG | 1464 | 45.01 | MGRPCIESSSSSPPLLMTSTSITETVNGEHDFRISGYSLCKGTGIGKYIASDTFTVGGYSWAIYFYPDGKSLEDNASYVSLFIALASDGSDVRALFELTLIDQSGKERHKVHSHFGRALESGPYTLKYRGSMWGYKRFFKRSTLETSDYLKDDCLQVHCCVGVVRSHTEGPKSYSIHVPPSDIGQHFGQLLECRKGTDVSFEVNGETFAAHKLVLAARSPVFRAQLFGPMRDQNVHCIKVEDIEAPVFKALLHFIYWDKLPDMEELTGLNTKWASTLMYQHLLAAADRYGLERLCMLCESNLCEDVAINTVATTLALAEQHHCVQLKSVCLKFVSLPENLRAVMQTEGFDYLKESCPHVLTDLLEHVARNNEHSLAICSHPNAIILDGSDVHGRRLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKFPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG | 487 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dapi20g01859 | 487 | FunFam | U6 snRNA-associated Sm-like protein LSm2 | 395 | 487 | - | - | |
| Dapi20g01859 | 487 | CDD | MATH | 28 | 161 | IPR002083 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | SMART | math-3 | 32 | 144 | IPR002083 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | CDD | LSm2 | 396 | 484 | IPR016654 | GO:0006397(InterPro) | |
| Dapi20g01859 | 487 | Gene3D | - | 391 | 486 | - | - | |
| Dapi20g01859 | 487 | CDD | BACK-AtBPM-like | 303 | 365 | IPR034090 | - | |
| Dapi20g01859 | 487 | SMART | Sm3 | 399 | 466 | IPR001163 | - | |
| Dapi20g01859 | 487 | ProSiteProfiles | BTB domain profile. | 197 | 264 | IPR000210 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | SMART | BTB-4 | 197 | 306 | IPR000210 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | Gene3D | Potassium Channel Kv1.1; Chain A | 173 | 301 | IPR011333 | - | |
| Dapi20g01859 | 487 | Pfam | MATH domain | 30 | 161 | IPR002083 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | Pfam | BTB-POZ domain | 188 | 304 | IPR000210 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | FunFam | BTB-POZ and math domain 1 | 173 | 300 | - | - | |
| Dapi20g01859 | 487 | CDD | BTB-POZ-BPM-plant | 183 | 303 | - | - | |
| Dapi20g01859 | 487 | Pfam | LSM domain | 401 | 465 | IPR001163 | - | |
| Dapi20g01859 | 487 | ProSiteProfiles | Sm domain profile. | 396 | 470 | IPR047575 | GO:0003723(InterPro) | |
| Dapi20g01859 | 487 | SUPERFAMILY | Sm-like ribonucleoproteins | 397 | 485 | IPR010920 | - | |
| Dapi20g01859 | 487 | PANTHER | BTB-POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 18 | 368 | IPR045005 | GO:0016567(InterPro) | |
| Dapi20g01859 | 487 | SUPERFAMILY | TRAF domain-like | 24 | 163 | - | - | |
| Dapi20g01859 | 487 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 26 | 165 | IPR008974 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | ProSiteProfiles | MATH-TRAF domain profile. | 27 | 161 | IPR002083 | GO:0005515(InterPro) | |
| Dapi20g01859 | 487 | Gene3D | - | 306 | 381 | - | - | |
| Dapi20g01859 | 487 | SUPERFAMILY | POZ domain | 174 | 304 | IPR011333 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dapi20g01859 | K10523 | speckle-type POZ protein | ||||
| Dapi20g01859 | K12621 | U6 snRNA-associated Sm-like protein LSm2 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Dapi | Dapi-Chr17:142043127 | Dapi20g01859 | Dapi-Chr20:109549412 | dispersed | |
| Dapi | Dapi-Chr20:109549412 | Dapi4g01911 | Dapi-Chr4:117737520 | dispersed | |
| Dapi | Dapi-Chr1:124146555 | Dapi20g01859 | Dapi-Chr20:109549412 | wgd | |
| Dapi | Dapi-Chr20:109549412 | Dapi31g02103 | Dapi-Chr31:103561067 | wgd | |
| Dapi | Dapi-Chr20:109549412 | Dapi4g01910 | Dapi-Chr4:117734016 | wgd |