AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01866 ATGGATTTCTTTAGATCTATATTATCAGATGATCCAGAGCCTGAAACTCCACATAATTACGAAGATTCCGATACAGATCCGCGCCAAAATCAATCGCCAAAACATCATTTAACAGAAGGCGATGAAGACGACGATTCCACTTCCAATATTAATTCGTCAGAAGACGGCAGCGGCAGCGGCAGCGGCGGTGGTTTATGGACCTTCGGAGATCTAGTGAAAACGTTGACCACGAAATCCGAATCAGTATTCGATACGTACCGTCGAGATCTGAAGGAATTCGGATCCGGTTTACGGAAGGAATCGGATCTGTTCCGTGAAGTTGCGAGCCGCGCGGTGAAGGAGTTGCCGGCGTCAATTGACGCCGGCACGTCGGCTATTGACGGAGTATTGAAATCCACGGCGGATATTATCGCGCAAGGTAAGGAAGCTCTTCTTTCACCTTCTGATGTTGATGATTCTGATTATTCTGATAGACATGCTTATAGTGATCGTAGTGGTTTGGATTCGGTTAGGTATAGTCGTTTTGATGCTCAATTGAATGCGATTAGGAGTGATTTAAGAACTTACTGTGAGGATCCTGAGGATTTAGATGATTATAATAAGTGGAAGTTAGGGTTTGTGGTTGGAGATAAGAAGGATGAGATTGAGGAGTTAGTTGGAGAGAATGGAGGATTAGAGGAAATCTATTTAAAACTTGTTCCGAGTGAGGTCGATGATGCAACGTTTTGGTTTAGGTATTATTATAAGGTACATAAGCTTGTACAGCAAGAGGAAATGAGAGCTAAGCTTGTGAAGAGATCGTTGTCGGTAGATGATGAAGAGGAATTAAGTTGGGACGTTGATGATGATGTTGATGAGGATGAAGTTAATACTCGGAGTTCCAAGATTGTTGATGAAGAAGATAAGGAGATGGCGAGCAATGTGGTTAGTGTTGATAAGAACATTGTTGAGGAAGCTAAATCAGTGCTGAAAGCTGATGAAAAGGTTGAAACTAAAGATAATAATAATGTCGCGGTTGAATCAAACGAATCTTTAATTCAGGAGGATGAAGATCTCGAGTGGGATGAGATTGAAGATATTGGGAAAACTGATGACAAGAACGTGTCTCGTGGTGACTTGACAGACAAAGGCGAGTTGCGTAAGCGATTGAGTACTGCTGCAGATGACGAGGAGGATTTGAGTTGGGATATTGAAGATGACGATGAGCCTGTAAAGCAAGGTAATAAGTGA 1230 42.44 MDFFRSILSDDPEPETPHNYEDSDTDPRQNQSPKHHLTEGDEDDDSTSNINSSEDGSGSGSGGGLWTFGDLVKTLTTKSESVFDTYRRDLKEFGSGLRKESDLFREVASRAVKELPASIDAGTSAIDGVLKSTADIIAQGKEALLSPSDVDDSDYSDRHAYSDRSGLDSVRYSRFDAQLNAIRSDLRTYCEDPEDLDDYNKWKLGFVVGDKKDEIEELVGENGGLEEIYLKLVPSEVDDATFWFRYYYKVHKLVQQEEMRAKLVKRSLSVDDEEELSWDVDDDVDEDEVNTRSSKIVDEEDKEMASNVVSVDKNIVEEAKSVLKADEKVETKDNNNVAVESNESLIQEDEDLEWDEIEDIGKTDDKNVSRGDLTDKGELRKRLSTAADDEEDLSWDIEDDDEPVKQGNK 409
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01866 409 PANTHER SYNAPSE-ASSOCIATED PROTEIN 26 396 IPR051494 GO:0005737(PANTHER)
Dapi20g01866 409 SMART wurzfinal6 202 254 IPR005607 -
Dapi20g01866 409 Gene3D BSD domain 163 265 IPR035925 -
Dapi20g01866 409 MobiDBLite consensus disorder prediction 1 43 - -
Dapi20g01866 409 Pfam BSD domain 202 258 IPR005607 -
Dapi20g01866 409 MobiDBLite consensus disorder prediction 1 64 - -
Dapi20g01866 409 MobiDBLite consensus disorder prediction 358 377 - -
Dapi20g01866 409 ProSiteProfiles BSD domain profile. 202 254 IPR005607 -
Dapi20g01866 409 MobiDBLite consensus disorder prediction 384 409 - -
Dapi20g01866 409 MobiDBLite consensus disorder prediction 359 377 - -
Dapi20g01866 409 SUPERFAMILY BSD domain-like 171 260 IPR035925 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01866 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260301 Dapi20g01866 Dapi4g01917
264904 Dapi4g01917 Dapi20g01866
385620 Dapi20g01866 Dapi4g01917
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr10:8873225 Dapi20g01866 Dapi-Chr20:109790515 dispersed
Dapi Dapi-Chr16:10999934 Dapi20g01866 Dapi-Chr20:109790515 dispersed
Dapi Dapi-Chr17:141997915 Dapi20g01866 Dapi-Chr20:109790515 dispersed
Dapi Dapi-Chr18:25305234 Dapi20g01866 Dapi-Chr20:109790515 dispersed
Dapi Dapi-Chr1:124096669 Dapi20g01866 Dapi-Chr20:109790515 dispersed
Dapi Dapi-Chr20:109790515 Dapi32g00710 Dapi-Chr32:10847534 dispersed
Dapi Dapi-Chr20:109790515 Dapi4g01917 Dapi-Chr4:117929419 wgd