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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01881 ATGGATGCTTCAAGAACCTCTTCTATTTGCTTCGGTATGGAATCTTTAGGGCTTGAAAATGACATCCCGGGCTCAAAAACATATTGTATTCTAGGACTCAAACAATCATCTAAGCAAAACCATGGAACCCCTAAAGTTCTATCACTTCTGTCTTCGATTCTCGATAGGTCCGTTCAAATGAACGAGACATTACTCGATAAAACACAAACTAAAGATATTGTAACGGTTTTTCATGGTTCAAGGGCACCGGCACTTGGCATTAAAGAGTACGTTGATAGAATATTCAAGTACTCGCATTGCAGCCCCTCGTGTTTTGTTGTTGCGCAGATTTACATGGACCGATTTATTCAATGTGGAAACGTTAATTTGACTTCTCTTAGTGTTCATCGGCTTCTCATCACTAGTGTAATGCTTGCTGCCAAGTTCATTGATGACGCATTCTACAACAACGCGTATTATGCAAAAGTGGGAGGAGTTACAACAGCAGAAATAAACAGATTGGAGATGAAGTTCCTATTTGGCCTGGACTTTCGACTTCATGTCAGCCTTCAGACGTTTGGCAGATACTGTTCCCAATTGGAAAAACAAGTTTCGTGTGAGCTGCAAATGGAACGACCTCCACGGGTGATTCACGCCCCATGTGGACTCAAAGAAACCTGGTCCGGAAGTGAAGACTCGAGTACGTACTCCACAACAGAGATACATATAGTATAA 714 41.88 MDASRTSSICFGMESLGLENDIPGSKTYCILGLKQSSKQNHGTPKVLSLLSSILDRSVQMNETLLDKTQTKDIVTVFHGSRAPALGIKEYVDRIFKYSHCSPSCFVVAQIYMDRFIQCGNVNLTSLSVHRLLITSVMLAAKFIDDAFYNNAYYAKVGGVTTAEINRLEMKFLFGLDFRLHVSLQTFGRYCSQLEKQVSCELQMERPPRVIHAPCGLKETWSGSEDSSTYSTTEIHIV 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01881 237 Gene3D - 34 212 - -
Dapi20g01881 237 SUPERFAMILY Cyclin-like 93 180 IPR036915 -
Dapi20g01881 237 Pfam Cyclin 63 179 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Dapi20g01881 237 PANTHER UNCHARACTERIZED 36 204 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01881 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
78310 Dapi20g01881 Dapi27g00296
260309 Dapi20g01881 Dapi4g01933
264912 Dapi4g01933 Dapi20g01881
385631 Dapi20g01881 Dapi4g01933
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:110532708 Dapi30g00320 Dapi-Chr30:5126253 dispersed
Dapi Dapi-Chr20:110532708 Dapi27g00296 Dapi-Chr27:5509672 wgd
Dapi Dapi-Chr20:110532708 Dapi4g01933 Dapi-Chr4:118499996 wgd