AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi21g00165 ATGAAGGAGCAGATCGTCGCCGACGAGAAGTCAGACGGTCTGGATATTGTTTCCGTTGGAGAGTTGTACGCCGGTCCATGGGAGAAGAAGTATTGGAGTTCGTCTAGGGGTAAAGACAGGCATCCATATCCAGTTGGATATGTAGCTCTTCGGGTGAATAACGGGAATACCTACAAGATGGCAATCCTTGAGGGACTTAAAGGACCTGAATTTGTGATTAGTTCCACGGATGGGCAATCTTGTTCTGGTCAAACCCCAGATATTGCATGGGAGGGCTTTCAAAAGAAGAGCTGTGTCCGCATAAAATTTTGGCGTGGAAAAAGATTTTCATGCAAGATAGATGGTGCGGAGTTATTTGGGTTAAAAAATCCACATGTCATGAGGTTACTGCGGGGATTGAAGGCAAATGTCAGCCAAATCCCACAGAAAAGTTCGCCATCTTTGGCCTTTGGCAATGGACAGTCTGAAGCAACAGATGAACATCACACTAAATATCCTGATTTGCATGTGAATTTGGTTAAAGTCCAGAGTAAAGAGAAAAAAAATAATAAACGTAAAGAAATTCAAGTGAAATCAGTTAGTGGACCAGGGCCTAAAAGAGAGCGACCTCAAGATTTGACGCAACGTGGTCATGAACCACACTGCAGGCCAAGTTTTGAAGGGAATCATAACAGTGAGATTCTTTCAAGTTCGTCAAATTTGAATGAAAATAATATATCTCATTTATTATCAGCAGAAGAAGAGATTCAGGTTGATTCCCTTATTTCATCTGATCATCTTGAAAAAGAGAAGCGTCTTTCTGTCCAAGAAGCAATCACTGAAGCAACAGATGAACATCACACTAAATATCCTGATTTGCATGTGAAGGTTAAACTCCAGAGTAAAGAGAAAAAAAGTAATAAACGTAAAGAAATTCAAGCGAAATCAGTTAGTGGACCAGGGCCTAAAAGAGAGCGACCTCAAGATTTGACGCAAAGTGGTCATGAACCACATTGCAGGCCAAGTTTTGAAGGGAATCATAACAATGGGATTCTTTCAAGTTCGTCAAATTTGAATGAAAATAATATATCTCATTTATTATCAGCAGAAGAAGGGATTCACGTTGATTCCCTTATTTCATATGATCATCTTGAAAAAGAGAAATGTCTTTCTGTCCAAGAAGCAATCACTGAAGAAGGTGCCAAGTTGTTAAAAAGCCAGGAAAATCATGACTTGTCGATGCTTAACCGCACACCAGGGTCCACTTCCTCAAAAACAGTGGATGAAAAGGGAGACCCACCACTTCAAAAAGAATCACAGATGTTGGATGATGTGAACCTCTATGCACCCGATACTTTGGATCTAACCTTAGACACATGCAATTTGGAGGTGGAGATCCCCAAAGAAAGTACATGCACATTAAATGAAAAGTTAAATTCTACCCAAAGTTTAGTTTCTGAAAAATGTGTAACTGACTCCCATTCAAAAGATGAGATGATTATTGCTTCTGGAAGTGATCATTCTGAAAAGAGTGATTCAGATCCAGTTGGACAGGAGATATCCAACTCAATGATGGCATTACTACTTCCACGAGCTCTTCCTCTGCTTAAGACTTTCTCAAGAAAGAAAAAGAAAAATCTTGATGGAATGTTCCAGAAGGAAAGAAAGGAGGTTGACCAATATCTAAAAGATGAACCTCCAGCCGAATCTTCTGAGCATTTGGAAAAGCTCAGTGGTGAAGTTCACATTCCAGACAAACCTTCTACTGAAAACGTTATATTTGAGAAGCAGAATGAAAGTGTTCTTTTCCCAAGTACAAGTAAGGATTCAGCGGTGCCTGGTTTAGAAGATTCAACAACTGTTGCACCTGATAGTTTTGAGAATGATCAATGTGAAATCATGGATTGCTCTCAGGCTAGGCAAGTTCAAGATACTGTTAAAGCTGATCTAAATACTTCTAGTATATTGTGCACCTACGAAGGACTTCATGAAGAAGTAGAAGTTAGTATTGGCAATGTGTCTTCTATGCTAACTGTCGATCATGTAGCTCAAAAGGGAATAATAGGTTTCACAGGGTGTGTTGATGCAGCAGTTCCGCTACATCAAGAGGTAGATGGTTTGAGTTCAGTTTTGCCGGGTCAAAGAACAAGTCAACATGACAAGAATAAAATGGTGCACAATGTTGAGGAAGCTAAAGTGGTGCCTAACGATGAGCTAGAAAATATCTTTGAACTTGTAGGTTGCTATATGCTCCCAACACCAGTTTCAATGGCAATGTTGAGAACAAAAGGGGATGAGGTATTTGTATGTGTTTTATGTGGCTATTCGATGGAAAATGGTAGGACATTGTTCCTTTACAAGGCATCAATTAAAGGAGAAACCAGAGGATGCCCTTCTTTTGTTGGTCACACAACAATTATCTCACCAACTTCAAGCAACACATCTGCTAGACCAATTATTTTGGATAGTTCTAGTTTACAGTTTACTCCAGATGGGAAATCCCTTGTTTTACTGAACAGCATTAAAGCTCCTTACTGCAGGGAGGGAAGTGTGAAATGTGGGTGTTCAGAGTGCAAATCAGATTGCTTCGAGAAGAATGCCGTAAAAATTGTGCAAGTAAAACTTGCCTATGTTCAAGTAGTATGCAAACTGAAAACAATGGACAACGTGTGCTCCATATTAGTTTGTGGGCCTAATTATCTTGTTGCTTCTGAAGAGAGCGGAAAAATGAACTTATGGACCATGAACTCATCATGGAGTGCTCCAACAGACCAGAGCTATTTGTCAACGTCTGATTGCATGCCTAATTGTATAGTTGAGATGAAAAGAATACCAAAATTTCCAGCTCTCATTGTTGGTCACAGTGCATTTGGGGATTTTTGCTTGTGGGATTTAACAAGAAGAACCCTTGTGTCCAAGTTTTCAGCTCCAAGAACTTCATTTCTTCCCTTCATTCCAATCAATTTATTTAGGTATCCTAGTCAAACATTATCTACCTCAGATGCTTGTAGGAAGAAACAAATAGAAGACATCATGGACGAAACACAAAGGTGGTCTTTAGGAACAGACAAACATGAGACTCTTCCAGTAAATGAAGAACATCTGTCCCTTGTTCTTCTTGTCTCATCTGTCTCAAATCTTGATTTTTTTGATGAATATTCACATAAAGATTTGGGAGTCGGTTCAGCTAGATCCTGGAGCCTAGCATTGTTGGCCAAAAATAAACTGGTTTCAGAAAATGCTTTGGATCCAAGTGCCACTGTAGTTGGTGCGTCATCAGGTTATGGAATCATAGGTACGTGTGACGGTTCTCTGTACATTTGGGAATTATCCACAGGTACCAAGCTCGGTTATCTTAGCCATTGCACAGGAGCCACGGTGTCATGCCTGGCGGCTGATGACTCAGACTCCGGCGCTTTTGCAGTGGCTGTTGACGGCAGCCAGCTGCAGGTATATGCTCCTGGAACATTGGCAAATAAAAAAACATAA 3468 40.31 MKEQIVADEKSDGLDIVSVGELYAGPWEKKYWSSSRGKDRHPYPVGYVALRVNNGNTYKMAILEGLKGPEFVISSTDGQSCSGQTPDIAWEGFQKKSCVRIKFWRGKRFSCKIDGAELFGLKNPHVMRLLRGLKANVSQIPQKSSPSLAFGNGQSEATDEHHTKYPDLHVNLVKVQSKEKKNNKRKEIQVKSVSGPGPKRERPQDLTQRGHEPHCRPSFEGNHNSEILSSSSNLNENNISHLLSAEEEIQVDSLISSDHLEKEKRLSVQEAITEATDEHHTKYPDLHVKVKLQSKEKKSNKRKEIQAKSVSGPGPKRERPQDLTQSGHEPHCRPSFEGNHNNGILSSSSNLNENNISHLLSAEEGIHVDSLISYDHLEKEKCLSVQEAITEEGAKLLKSQENHDLSMLNRTPGSTSSKTVDEKGDPPLQKESQMLDDVNLYAPDTLDLTLDTCNLEVEIPKESTCTLNEKLNSTQSLVSEKCVTDSHSKDEMIIASGSDHSEKSDSDPVGQEISNSMMALLLPRALPLLKTFSRKKKKNLDGMFQKERKEVDQYLKDEPPAESSEHLEKLSGEVHIPDKPSTENVIFEKQNESVLFPSTSKDSAVPGLEDSTTVAPDSFENDQCEIMDCSQARQVQDTVKADLNTSSILCTYEGLHEEVEVSIGNVSSMLTVDHVAQKGIIGFTGCVDAAVPLHQEVDGLSSVLPGQRTSQHDKNKMVHNVEEAKVVPNDELENIFELVGCYMLPTPVSMAMLRTKGDEVFVCVLCGYSMENGRTLFLYKASIKGETRGCPSFVGHTTIISPTSSNTSARPIILDSSSLQFTPDGKSLVLLNSIKAPYCREGSVKCGCSECKSDCFEKNAVKIVQVKLAYVQVVCKLKTMDNVCSILVCGPNYLVASEESGKMNLWTMNSSWSAPTDQSYLSTSDCMPNCIVEMKRIPKFPALIVGHSAFGDFCLWDLTRRTLVSKFSAPRTSFLPFIPINLFRYPSQTLSTSDACRKKQIEDIMDETQRWSLGTDKHETLPVNEEHLSLVLLVSSVSNLDFFDEYSHKDLGVGSARSWSLALLAKNKLVSENALDPSATVVGASSGYGIIGTCDGSLYIWELSTGTKLGYLSHCTGATVSCLAADDSDSGAFAVAVDGSQLQVYAPGTLANKKT 1155
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 556 576 - -
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 141 232 - -
Dapi21g00165 1155 SUPERFAMILY WD40 repeat-like 814 1148 IPR036322 GO:0005515(InterPro)
Dapi21g00165 1155 Gene3D - 845 1154 IPR015943 GO:0005515(InterPro)
Dapi21g00165 1155 ProSiteProfiles FYR domain FYRN motif profile. 6 65 IPR003888 GO:0005634(InterPro)
Dapi21g00165 1155 ProSiteProfiles FYR domain FYRC motif profile. 66 146 IPR003889 GO:0005634(InterPro)
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 202 219 - -
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 157 188 - -
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 402 422 - -
Dapi21g00165 1155 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 289 628 IPR040092 GO:0005634(PANTHER)|GO:0051726(PANTHER)
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 292 349 - -
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 400 432 - -
Dapi21g00165 1155 Gene3D - 10 137 - -
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 141 156 - -
Dapi21g00165 1155 MobiDBLite consensus disorder prediction 556 579 - -
Dapi21g00165 1155 Pfam F-Y rich C-terminus 68 134 IPR003889 GO:0005634(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi21g00165 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
254133 Dapi5g00121 Dapi21g00165
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr21:3443947 Dapi5g00121 Dapi-Chr5:2726319 wgd