AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00046 ATGGCAAGTACTCATCAGGGCATCCACGGCAATCTCCTTGAAATAACCGTTGTTAGCTGCTGTAAACTAAAGGACACGGAATGGATTTCACGGCAAGATCCTTACGTCTGTATCGAATACGGTAGCAGTAAATCGACCACTCGTACCTGTACAGATGGAGGCAAGAACCCTACGTTTCAAGAGAAGTTTGTTTTTACCCTTATTGAAGGATTGAGAGATCTGAATGTTTCGGTTTGGAATAGCAATACAGTTACACATGATGATTTCATCGGTGGTGGAAAGATTCCATTGGCAAAAGCTCTTTCTCAGGGATTTGATGATAGTAGCTGGCCGCTACAGAGTAATACTGGCAGGCACGCCGGAGAAGTCCGAATAATAATGCATTATACTAACGGAAATAAACCATCAAAAGATTCTGCTCAGAAACCATCAAAGGGTTTTACACCATCAGCATCGCCACATATACCTCCTATGGGGGCCATGTACCCTGCTGCACCCCCACCGGCTTATCCTCCACCAGGCGGGGCTTATCCTCCACCAGGCGGTGCTTATCCTCCACCCGGTGGTGCTTATCCTCCATCCTACGCAGCATATCCACATAATTCAGGTGGTTATCCACCGGCACCTTACCCACCTCAGCCGGTTACTTACCCTCCTCACTCCTATCCACCAAATCCAGCTTATGGATCACATTATCCCCCTGGTTCTCCATTCCCTGGAATGTATCCTCCTCCGCCGCCTTATTGA 747 47.79 MASTHQGIHGNLLEITVVSCCKLKDTEWISRQDPYVCIEYGSSKSTTRTCTDGGKNPTFQEKFVFTLIEGLRDLNVSVWNSNTVTHDDFIGGGKIPLAKALSQGFDDSSWPLQSNTGRHAGEVRIIMHYTNGNKPSKDSAQKPSKGFTPSASPHIPPMGAMYPAAPPPAYPPPGGAYPPPGGAYPPPGGAYPPSYAAYPHNSGGYPPAPYPPQPVTYPPHSYPPNPAYGSHYPPGSPFPGMYPPPPPY 248
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00046 248 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 4 248 IPR052981 -
Dapi23g00046 248 CDD C2 13 110 - -
Dapi23g00046 248 MobiDBLite consensus disorder prediction 132 148 - -
Dapi23g00046 248 Pfam C2 domain 12 103 IPR000008 -
Dapi23g00046 248 MobiDBLite consensus disorder prediction 202 229 - -
Dapi23g00046 248 MobiDBLite consensus disorder prediction 131 153 - -
Dapi23g00046 248 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Dapi23g00046 248 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 8 131 IPR035892 -
Dapi23g00046 248 MobiDBLite consensus disorder prediction 204 229 - -
Dapi23g00046 248 Gene3D C2 domain 11 131 IPR035892 -
Dapi23g00046 248 SMART C2-3c 12 109 IPR000008 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00046 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
73917 Dapi12g01057 Dapi23g00046
76476 Dapi18g00651 Dapi23g00046
79290 Dapi23g00046 Dapi28g00987
79291 Dapi23g00046 Dapi2g00883
251491 Dapi7g00039 Dapi23g00046
386884 Dapi23g00046 Dapi7g00039
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:1392260 Dapi28g00987 Dapi-Chr28:81028599 dispersed
Dapi Dapi-Chr18:14974153 Dapi23g00046 Dapi-Chr23:1392260 wgd
Dapi Dapi-Chr2:20538846 Dapi23g00046 Dapi-Chr23:1392260 wgd
Dapi Dapi-Chr23:1392260 Dapi7g00039 Dapi-Chr7:895493 wgd