AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00055 ATGAGGTTGCGTATGTACATACCGCATAACGAAATCAAATGCGGATGCAATGCGTTCTTCGCAATCTTCTTCGCCACATGTTTCCTGATCGCATATGCTTCAGCGCTCAAGGAAGGACAAACGTGCGTAGATAATAGCAATTGTGACTCAGGGTTACATTGTGAGGCTTGTGTTGCAGACGGCAATATTCGACCTCGATGTACTCGTATTCAGCCTATCAGTCCATTTTCTAAGGTGAAAGGATTGCCGTTCAATCGGTACTCGTGGTTAACGACACATAATGCGTTCGCGAAATTTGGAGAGAAGTCGGCTACCGGTTCCGTCGTTCTAGCTCCGACGAACCAGCAGGATTCTGTTACTTCTCAGCTCGATAATGGCGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGCCATTCCTTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCTATTAATGTTCTGAAAGAGATTCAAGTTTTCCTAGAAAGGAATCCAACTGAAATCATAACCATAATCATTGAAGATTATGTTACCTCACCAAACGGTCTAACTAAGGTCTTCAATGCTGCTGGCTTGAGGAAATACTGGTTTCCAGCAGCCCAAATGCCAAGTGATGGTAGGGACTGGCCCACACTTGACTCTATGGTCCGCCAAAATCACCGTTTGGTAGTTTTCACTTCAAAATCTTCTAAACAGGCTACTGAAGGGATTGCATATGAGTGGAAGTACTTGGTTGAAAATCAATATGGAACTGTCGGGATGAAAAGTGGTTTATGCCCTAACCGTGCTGAGTCAGCAGCAATGAACACTACATCAAGATCACTGGTTTTAATGAACTATTTCCCGGATACCCCAGATCTTACCCAAGCCTGCAAGCACAATTCAGACCCATTAATAAGTATGGTGAATACATGCCATGATGTAGCTGGTAAACGTTGGCCAAATTTCATTACTGTTGACTTTTACAAGAGGAGTAATGGTGGGGGTGCACCTGCTGCTGTAGATATGGCTAACGGGCAGCTGGTTTGTGGGTGTAACACCATTGCAGCATGCAGGCCAGGCATGACCTATGGAGCCTGTGGCCTCCCAGAGGCTGGGGCTGCTCCAACCCCAGCTTCAGCATTAAAAAGCTCCGGGAACGCGGGTGATCAACCGGGTCAACTTGGATGGCTGTTTGGGTCAGGTTTGATGGCTCTAGCTTTGTGTTTTTAA 1242 45.65 MRLRMYIPHNEIKCGCNAFFAIFFATCFLIAYASALKEGQTCVDNSNCDSGLHCEACVADGNIRPRCTRIQPISPFSKVKGLPFNRYSWLTTHNAFAKFGEKSATGSVVLAPTNQQDSVTSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIQVFLERNPTEIITIIIEDYVTSPNGLTKVFNAAGLRKYWFPAAQMPSDGRDWPTLDSMVRQNHRLVVFTSKSSKQATEGIAYEWKYLVENQYGTVGMKSGLCPNRAESAAMNTTSRSLVLMNYFPDTPDLTQACKHNSDPLISMVNTCHDVAGKRWPNFITVDFYKRSNGGGAPAAVDMANGQLVCGCNTIAACRPGMTYGACGLPEAGAAPTPASALKSSGNAGDQPGQLGWLFGSGLMALALCF 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00055 413 SUPERFAMILY PLC-like phosphodiesterases 81 352 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Dapi23g00055 413 Gene3D Phosphatidylinositol (PI) phosphodiesterase 75 339 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Dapi23g00055 413 PANTHER UNCHARACTERIZED 46 361 IPR051057 GO:0008081(PANTHER)
Dapi23g00055 413 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 83 191 - -
Dapi23g00055 413 CDD PI-PLCc-At5g67130-like 74 348 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00055 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
76481 Dapi18g00675 Dapi23g00055
251496 Dapi7g00046 Dapi23g00055
386889 Dapi23g00055 Dapi7g00046
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:1553196 Dapi30g00844 Dapi-Chr30:15813055 dispersed
Dapi Dapi-Chr14:16187180 Dapi23g00055 Dapi-Chr23:1553196 wgd
Dapi Dapi-Chr18:15787517 Dapi23g00055 Dapi-Chr23:1553196 wgd
Dapi Dapi-Chr2:19754944 Dapi23g00055 Dapi-Chr23:1553196 wgd
Dapi Dapi-Chr23:1553196 Dapi30g00839 Dapi-Chr30:15750760 wgd
Dapi Dapi-Chr23:1553196 Dapi7g00046 Dapi-Chr7:1051684 wgd