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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00058 ATGGCGATTTCCTCTTCTCAACTTAATAACTCCCAATTCGCATTACGATCTTCTTCCTTGTTTTCGTCTCCTCTGCCTCTGCCTCTGCAGCAGATTAATGGATTCTCGTTCCGCCCACTCAAAGTCAAAACGAAATCCCCTCTTCCAGTCCTCTCCATGCGACGCCAATCCAAAGCAACAGTGGTGACGGGGCAGTCATGGAGCACATCAGTTCTCGACAGCAAAACCCCAGTACTAGTCGAGTTCTATGCAAGCTGGTGCGGACCGTGCCAAATGGTGCACCGTGTGATCGTTGAGATTGCAGCAGAATATGCAGGGAAGGTCAACTGTTATGTGTTGAATGCTGACAAGGACCCGCGCATCACTGAGGAATATGACATTAAAGCGGTCCCAATAGTGGTTTTGTTCAAGAATGGTGAGAAATGTGAGTCAGTGGTTGGGACCATGCCTAAGGAGTTCTATGTGGCTGCCATTGAAAGGGTGTTGTCATCTTCATCTTGA 501 48.3 MAISSSQLNNSQFALRSSSLFSSPLPLPLQQINGFSFRPLKVKTKSPLPVLSMRRQSKATVVTGQSWSTSVLDSKTPVLVEFYASWCGPCQMVHRVIVEIAAEYAGKVNCYVLNADKDPRITEEYDIKAVPIVVLFKNGEKCESVVGTMPKEFYVAAIERVLSSSS 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00058 166 Gene3D Glutaredoxin 59 165 - -
Dapi23g00058 166 FunFam Thioredoxin 53 165 - -
Dapi23g00058 166 CDD TRX-family 70 159 - -
Dapi23g00058 166 Pfam Thioredoxin 60 158 IPR013766 -
Dapi23g00058 166 SUPERFAMILY Thioredoxin-like 52 163 IPR036249 -
Dapi23g00058 166 ProSitePatterns Thioredoxin family active site. 79 97 IPR017937 -
Dapi23g00058 166 ProSiteProfiles Thioredoxin domain profile. 42 163 IPR013766 -
Dapi23g00058 166 PRINTS Thioredoxin family signature 78 86 - -
Dapi23g00058 166 PRINTS Thioredoxin family signature 86 95 - -
Dapi23g00058 166 PRINTS Thioredoxin family signature 126 137 - -
Dapi23g00058 166 PANTHER GEO12009P1 55 162 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00058 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
78923 Dapi22g00587 Dapi23g00058
79299 Dapi23g00058 Dapi6g00833
251498 Dapi7g00049 Dapi23g00058
386891 Dapi23g00058 Dapi7g00049
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr13:114659913 Dapi23g00058 Dapi-Chr23:1602364 dispersed
Dapi Dapi-Chr23:1602364 Dapi23g00424 Dapi-Chr23:9419824 dispersed
Dapi Dapi-Chr22:9029903 Dapi23g00058 Dapi-Chr23:1602364 wgd
Dapi Dapi-Chr23:1602364 Dapi6g00833 Dapi-Chr6:13290243 wgd
Dapi Dapi-Chr23:1602364 Dapi7g00049 Dapi-Chr7:1090580 wgd