AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00103 ATGGATACGTTGCAGCATATAATCGAAGAAGCAAAGCTTCGTACAGTGTGGTGGACGGTTTGTATATTCATCGTCACTTACTTCTTAACACACACAAGCAAATCAATGTGGATGAATGTTCCAATAGCAATTATGTTAATATCAGGTGTTCATATTTTAATTAGTGAAGTGGAATTCCATTGGAAAACTAGAAAACCTAATCAACAGTCATACTTATCTCACCTAGAGAGGAAACAGTTATCTGTGAATGATTCTCGCCTTTCCGTGTTGCAAACTAAGTGGAAGAGAAAGATTGATTCTCCGGTAGTTGAGGCTGCTATGGAGGATTTTGTTAACAAAATTTTGCAAGAATTTGTGGTGGATTTGTGGTATTCGGGTATAACACCTGATAAGGAAGCACCACAGCTGATTCATGAAATAATTATGGATATTTTTGCGGAGATTTCTATACGAGCTAAAGATATAAACCTTGTCGACTTGCTAACCAGGGATTTGGTTGATTTAGTAGGGGATCATTTGGAGCTTTTTAGGAAAAATCAAGATGTGATTGGGAGGGAGGTTATGGTGACATTATCTTCTGAAGAACGAGATGAAAGATTAAAACATCATCTGATGGCTTCTAAAGAGCTTCATCCGGCTTTGATGTCTTCAGAGAGTGAGTACAAGTTTCTTAAACGGATTATGGGGGCGGTTTTGGTTGCAGTCCTTAGACCTCGTGAAGCCCAATGCCCTTTAGTTCGGTGCATTGTGCGAGAGCTTTTAACTTGTTTGATAATGCAACCCGTGATGAGATTTGCAAGCCCTGGGCATATCAATGAATTGATTGAGGGTCTTTTCCTCGCCAACAATAATAAAGACGGAAGCGAGGCAGGTGATGATCGGTCAACTAATGCCACGGGTCAAAACCATAATCAGGGAAAAAGTCAATATGTGGCTTCTATGAAAGGCGACTCTTCTAGCACTCAAAAAAATAATAATGATCAAAATGGAACAGGTCTAGATGAGCTGTTGAACCCACAGTCCTTTGCTTGGGACCGGGGTCTTGAGGCTGCTACCCAAAGAAGATCAGAAGTCCTTCAGTCTGATAATCTCGAAAATATGTGGACCAAAGGAAGAAATTACAAAAAGAAAACTAAGCTTACAGACGGTGCTGGAATAAATAAAAATCATCAACAGCAAAATCTTGATGGTAGAATTTTGAGTGATCAAAGCAAGAGATCAAATCCTTCCGATTTAATTGATGGAAATTATTCTAATGTTGTTATTGGGAGTAAACCAAAACTGGAAAGCTCAAACAGTGTTTCTGATCAAATTCAAGTTGGTGGACCGATAATTTCTGAGTTCTATAGTGCTAATGTTGGTGGAGATAATGATGTACTTAATGTTAATCGTATTGTTTTTGATAAAGTAACACGTACTGAAGGATATGTTCCAAAGATCAGGTGTCGGGTTCTGGGAGCATACTTTGAGAATCTTGACTCAAAATCATTTGCAGTCTATTCCATTGCAGTGGCAGATGCTGATAACAAGACTTGGTTTGTGAAGAGAAGATACAGGAACTTTGAGAGATTGCATCGACACCTTAAAGACATTCCCAATTATACACTACATTTGCCTCCTAAAAGAATATTCTCATCCAGCACAGAGGACGCATTTGTTCATCAACGTTGTGTACAGCTTGATAAATATCTTCAAGATCTTTTGTCTATAGCTAATATTGCTGAGCAACATGAAGTATGGGACTTCTTGAGCATGTCTTCAAAGAGTTACTCTTTTGGAAGGTCATCATCGGTGGTGAGAACCTTAGCAGTGAATGTGGACGATACTGTAGATGATATCGTACGCCAATTCAAAGGGGTTTCCGGTGGTTTAAAGAAGAAAGTTTCTAGCCCGAGATTATCTTCTGAATCTTCTGCTTCATTTGCTAACAGAAACGTGTCATTCAAGGCTGATGAACTAACTGATTCGGTTACAAAGCTAACTACCTCGGATGTGGCTAACAGTTTTTCTCACAATAAAGGTGAAAAGGTAGGGAAATTTCACCTAGAGGAAGTAGGTTACACTGCACAAACTAATGAACGGAATTTGGAAAAAAGTGATGAACATAATGGAATTAGTTCAGAGCTTCGATCTGAAATACTCAGTCTTGCTGCGAATTTTCCGTCAACTTCTGGTCTTAAGGAAGATCCACTTGGTGTTCCAGCAGAGTGGACCCCAACTAATGTTTTTTGGATATCAAAGCAAATCTTGCAATTGATGATGGAAGATACTATTGATGACTGGCTTTTAAGGCAAATTCGTTTTCTCAGAAGAGATAATCTTGTTGCTCAAGGAGTTCACTGGGTCCAAGATATTCTTTGGCCTGAAGGAATATTCTTTCTGAAATTAAGAACAACTCAAACCGATTCTTCTCCGTCAAACGATCAGAGTTCTTGCAAAACTCCATCCGCCGGTAAAAACAATAAAGGGTCCTTTGAGGAGCAGCTAGAGGCAGCGCGTAGAGCTAGCGATATCAAAAAGATGATATTAACGGGAGCCCCGACTACATTGGTCAGCTTGATCGGACACAAACAATACGAGCGAAGTGCCAAAGACATTTATTATTTTCTCCAGTCTGCTGTGTGTTTGAAGCAACTTGGATACGGTTTACTTGAACTTATACTCATAACGGTTTTCCCAGAGCTGCGAGACATCATATCAAATATTCACGAGAAGAAACATGATCCGACGGTCTAG 2736 39.47 MDTLQHIIEEAKLRTVWWTVCIFIVTYFLTHTSKSMWMNVPIAIMLISGVHILISEVEFHWKTRKPNQQSYLSHLERKQLSVNDSRLSVLQTKWKRKIDSPVVEAAMEDFVNKILQEFVVDLWYSGITPDKEAPQLIHEIIMDIFAEISIRAKDINLVDLLTRDLVDLVGDHLELFRKNQDVIGREVMVTLSSEERDERLKHHLMASKELHPALMSSESEYKFLKRIMGAVLVAVLRPREAQCPLVRCIVRELLTCLIMQPVMRFASPGHINELIEGLFLANNNKDGSEAGDDRSTNATGQNHNQGKSQYVASMKGDSSSTQKNNNDQNGTGLDELLNPQSFAWDRGLEAATQRRSEVLQSDNLENMWTKGRNYKKKTKLTDGAGINKNHQQQNLDGRILSDQSKRSNPSDLIDGNYSNVVIGSKPKLESSNSVSDQIQVGGPIISEFYSANVGGDNDVLNVNRIVFDKVTRTEGYVPKIRCRVLGAYFENLDSKSFAVYSIAVADADNKTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCVQLDKYLQDLLSIANIAEQHEVWDFLSMSSKSYSFGRSSSVVRTLAVNVDDTVDDIVRQFKGVSGGLKKKVSSPRLSSESSASFANRNVSFKADELTDSVTKLTTSDVANSFSHNKGEKVGKFHLEEVGYTAQTNERNLEKSDEHNGISSELRSEILSLAANFPSTSGLKEDPLGVPAEWTPTNVFWISKQILQLMMEDTIDDWLLRQIRFLRRDNLVAQGVHWVQDILWPEGIFFLKLRTTQTDSSPSNDQSSCKTPSAGKNNKGSFEEQLEAARRASDIKKMILTGAPTTLVSLIGHKQYERSAKDIYYFLQSAVCLKQLGYGLLELILITVFPELRDIISNIHEKKHDPTV 911
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00103 911 PANTHER PX SERINE-THREONINE KINASE PXK 4 907 IPR051837 -
Dapi23g00103 911 Pfam Sorting nexin C terminal 737 872 IPR013937 -
Dapi23g00103 911 SMART PX-2 476 586 IPR001683 GO:0035091(InterPro)
Dapi23g00103 911 MobiDBLite consensus disorder prediction 802 823 - -
Dapi23g00103 911 MobiDBLite consensus disorder prediction 384 415 - -
Dapi23g00103 911 MobiDBLite consensus disorder prediction 375 415 - -
Dapi23g00103 911 SMART PXA-3 100 283 IPR003114 -
Dapi23g00103 911 ProSiteProfiles PXA domain profile. 100 283 IPR003114 -
Dapi23g00103 911 Pfam PX domain 508 584 IPR001683 GO:0035091(InterPro)
Dapi23g00103 911 Pfam PXA domain 100 277 IPR003114 -
Dapi23g00103 911 MobiDBLite consensus disorder prediction 286 336 - -
Dapi23g00103 911 CDD PX-SNX19-like-plant 480 584 - -
Dapi23g00103 911 MobiDBLite consensus disorder prediction 802 824 - -
Dapi23g00103 911 MobiDBLite consensus disorder prediction 293 336 - -
Dapi23g00103 911 SUPERFAMILY PX domain 480 587 IPR036871 GO:0035091(InterPro)
Dapi23g00103 911 Gene3D - 481 594 IPR036871 GO:0035091(InterPro)
Dapi23g00103 911 ProSiteProfiles PX domain profile. 478 590 IPR001683 GO:0035091(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00103 K17925 sorting nexin-13
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Event-related genes

Select Gene_1 Gene_2 Event_name
79310 Dapi23g00103 Dapi2g00813
251518 Dapi7g00081 Dapi23g00103
386911 Dapi23g00103 Dapi7g00081
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:2130061 Dapi2g00813 Dapi-Chr2:18456281 dispersed
Dapi Dapi-Chr23:2130061 Dapi7g00081 Dapi-Chr7:1544027 wgd