AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00161 ATGGCTGAAAAATTGATACAGAGATTAGAGGCCGCCGTTACGCGGCTTGAATCGTTCTCCCGCGGTTCTCAGCCCCAAGCCGCCGCACTTGACGCCGCATCCGCCTCATCTGAACCGTCAATCCTCGCATTTGACGATCTCATCACGGAATACGTCGACAAGGTCTCCAATGCCGCGGAGAAGATTGGCGGACAAATTAAGGATATTACGGTTGTTCTCCGAGAGGCGTTTTCCGCTCAGAAGGAGCTTCTCGTTAAGATCAAACAAACTCAGGTTCTTGTAGAATTCAAAAACAAAGATCCAAGTCACATGGAATGGGCAAGATCTCTCAAGGAACTTTATGTACCAGGGTTAAGGGATTATGTTAAGAGTCACTATCCTTTGGGACCCATATGGAGTGCAACAGGGGCAACCGTATCTGCTCCATCAAAGTCGGGTGGTCCTGCTGCTCCAAATCCCCCACCAGCTTCACTTGCCAGTTCATCATCTTCTTCATCATCTTCATCCCGTCCAAAACAAGGAATGTCTGCTGTTTTTCAAGAAATTAGTTCAAAGCCCGTTACTGCTGGATTAAAAAAAGTTACAGATGATATGAAGTCGAAAAACCGCACAGATAGAGCAGGAATTGTGAGTTCTGGTGAAAAAGAACCACGCAAGAGTGTGAAATCAGATGCTAAAGTTGGTCCTCCAAAATTTGAGCTTGTAATGGGTCGCAAATGGGTTGTTGAGAATCAAATTGGCGCGAAGGATTTGTCGATTGATGAGTGGAAAGTTAACAACATAACTGTTGACAAATGCACAAAAATGGGTGTTGTATTCACGGTCAGTGACAAATTTGTGATTTATGACGTTGTTGCTGCTTTTGAGATTGTTAATTGCAATGGTGTTGAGGTGCAATGCCAGGGTGCAGCCCCTACTATTTCAATAGACAACACATCAGGTTGCCAGCTGTACTTGAGCAAAGATTCTCTAGAATCTTCTATCACAACTTCCAAGGCAACTGAAGTTAATGTGATGGTACCTGCCAAAGATCCTGATGCTGATCTGGCGGAACATGCTATGCCACAAATGTACCTTCACACTTACGAGGATGGCCACTTTATTACAACCCCTGTCTCCCACTCTGGAGGGTAA 1134 45.06 MAEKLIQRLEAAVTRLESFSRGSQPQAAALDAASASSEPSILAFDDLITEYVDKVSNAAEKIGGQIKDITVVLREAFSAQKELLVKIKQTQVLVEFKNKDPSHMEWARSLKELYVPGLRDYVKSHYPLGPIWSATGATVSAPSKSGGPAAPNPPPASLASSSSSSSSSSRPKQGMSAVFQEISSKPVTAGLKKVTDDMKSKNRTDRAGIVSSGEKEPRKSVKSDAKVGPPKFELVMGRKWVVENQIGAKDLSIDEWKVNNITVDKCTKMGVVFTVSDKFVIYDVVAAFEIVNCNGVEVQCQGAAPTISIDNTSGCQLYLSKDSLESSITTSKATEVNVMVPAKDPDADLAEHAMPQMYLHTYEDGHFITTPVSHSGG 377
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00161 377 MobiDBLite consensus disorder prediction 190 225 - -
Dapi23g00161 377 ProSiteProfiles C-CAP-cofactor C-like domain profile. 229 354 IPR017901 -
Dapi23g00161 377 Gene3D - 251 376 IPR016098 -
Dapi23g00161 377 SMART carp 293 330 IPR006599 -
Dapi23g00161 377 SMART carp 257 283 IPR006599 -
Dapi23g00161 377 MobiDBLite consensus disorder prediction 192 225 - -
Dapi23g00161 377 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Dapi23g00161 377 MobiDBLite consensus disorder prediction 139 176 - -
Dapi23g00161 377 Pfam CAP N-terminal conserved motif 3 35 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Dapi23g00161 377 Gene3D - 89 137 IPR036222 -
Dapi23g00161 377 Gene3D - 40 88 IPR036222 -
Dapi23g00161 377 MobiDBLite consensus disorder prediction 156 176 - -
Dapi23g00161 377 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 40 155 IPR036222 -
Dapi23g00161 377 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 3 91 IPR001837 GO:0003779(PANTHER)|GO:0003779(InterPro)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Dapi23g00161 377 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 229 376 IPR036223 -
Dapi23g00161 377 Pfam Adenylate cyclase associated (CAP) C terminal 257 374 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00161 K17261 adenylyl cyclase-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
76499 Dapi18g00730 Dapi23g00161
79328 Dapi23g00161 Dapi2g00807
79329 Dapi23g00161 Dapi6g00855
251553 Dapi7g00143 Dapi23g00161
386946 Dapi23g00161 Dapi7g00143
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:80882858 Dapi23g00161 Dapi-Chr23:3549999 wgd
Dapi Dapi-Chr18:16982406 Dapi23g00161 Dapi-Chr23:3549999 wgd
Dapi Dapi-Chr2:18310578 Dapi23g00161 Dapi-Chr23:3549999 wgd
Dapi Dapi-Chr22:8599058 Dapi23g00161 Dapi-Chr23:3549999 wgd
Dapi Dapi-Chr23:3549999 Dapi6g00855 Dapi-Chr6:13617703 wgd
Dapi Dapi-Chr23:3549999 Dapi7g00143 Dapi-Chr7:3003083 wgd